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Cluster: HRGMv2_1016_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1016_1 HRGMv2_1016_1_80 92268 93437 - CE9
STP HRGMv2_1016_1 HRGMv2_1016_1_81 93556 94722 - SIS | SIS
TF HRGMv2_1016_1 HRGMv2_1016_1_82 94837 95568 - GntR
TC HRGMv2_1016_1 HRGMv2_1016_1_83 95753 96835 - 4.A.6.1.4
TC HRGMv2_1016_1 HRGMv2_1016_1_84 96825 97625 - 4.A.6.1.4
TC HRGMv2_1016_1 HRGMv2_1016_1_85 97716 98198 - 4.A.6.1.4
pfam HRGMv2_1016_1 HRGMv2_1016_1_86 98235 98516 - YajC
TC HRGMv2_1016_1 HRGMv2_1016_1_87 98516 98959 - 4.A.6.1.16
Gene ID: HRGMv2_1016_1_80
Type: CAZyme
Location: 92268 - 93437 (-)
Gene ID: HRGMv2_1016_1_81
Type: STP
Location: 93556 - 94722 (-)
Gene ID: HRGMv2_1016_1_82
Type: TF
Location: 94837 - 95568 (-)
Gene ID: HRGMv2_1016_1_83
Type: TC
Location: 95753 - 96835 (-)
Gene ID: HRGMv2_1016_1_84
Type: TC
Location: 96825 - 97625 (-)
Gene ID: HRGMv2_1016_1_85
Type: TC
Location: 97716 - 98198 (-)
Gene ID: HRGMv2_1016_1_86
Type: pfam
Location: 98235 - 98516 (-)
Gene ID: HRGMv2_1016_1_87
Type: TC
Location: 98516 - 98959 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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