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Cluster: HRGMv2_1016_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1016_15 HRGMv2_1016_15_15 16878 19253 - 3.A.3.5.15
STP HRGMv2_1016_15 HRGMv2_1016_15_16 19504 21588 - Pkinase
STP HRGMv2_1016_15 HRGMv2_1016_15_17 21760 22722 - FHA
TC HRGMv2_1016_15 HRGMv2_1016_15_18 23311 25554 + 1.I.1.1.3
STP HRGMv2_1016_15 HRGMv2_1016_15_19 26175 26936 + Fer4
TC HRGMv2_1016_15 HRGMv2_1016_15_20 27360 27872 + 4.A.1.2.5
pfam HRGMv2_1016_15 HRGMv2_1016_15_21 27879 28745 + PRD | PRD | CAT_RBD
TC HRGMv2_1016_15 HRGMv2_1016_15_22 28845 30461 + 4.A.1.1.3
CAZyme HRGMv2_1016_15 HRGMv2_1016_15_23 30465 31847 + GH4
Gene ID: HRGMv2_1016_15_15
Type: TC
Location: 16878 - 19253 (-)
Gene ID: HRGMv2_1016_15_16
Type: STP
Location: 19504 - 21588 (-)
Gene ID: HRGMv2_1016_15_17
Type: STP
Location: 21760 - 22722 (-)
Gene ID: HRGMv2_1016_15_18
Type: TC
Location: 23311 - 25554 (+)
Gene ID: HRGMv2_1016_15_19
Type: STP
Location: 26175 - 26936 (+)
Gene ID: HRGMv2_1016_15_20
Type: TC
Location: 27360 - 27872 (+)
Gene ID: HRGMv2_1016_15_21
Type: pfam
Location: 27879 - 28745 (+)
Gene ID: HRGMv2_1016_15_22
Type: TC
Location: 28845 - 30461 (+)
Gene ID: HRGMv2_1016_15_23
Type: CAZyme
Location: 30465 - 31847 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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