Cluster: HRGMv2_1015_CGC9
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1015
- CGC Family ID: CGCFAM_00005
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1015_8 | HRGMv2_1015_8_7 | 6041 | 7144 | - | GT4 |
| CAZyme | HRGMv2_1015_8 | HRGMv2_1015_8_8 | 7141 | 8280 | - | GT4 |
| CAZyme | HRGMv2_1015_8 | HRGMv2_1015_8_9 | 8291 | 9394 | - | GT4 |
| pfam | HRGMv2_1015_8 | HRGMv2_1015_8_10 | 9391 | 9648 | - | Bac_transf |
| TC | HRGMv2_1015_8 | HRGMv2_1015_8_11 | 9645 | 10163 | - | 9.B.18.1.3 |
Gene ID: HRGMv2_1015_8_7
Type: CAZyme
Location: 6041 - 7144 (-)
Type: CAZyme
Location: 6041 - 7144 (-)
Gene ID: HRGMv2_1015_8_8
Type: CAZyme
Location: 7141 - 8280 (-)
Type: CAZyme
Location: 7141 - 8280 (-)
Gene ID: HRGMv2_1015_8_9
Type: CAZyme
Location: 8291 - 9394 (-)
Type: CAZyme
Location: 8291 - 9394 (-)
Gene ID: HRGMv2_1015_8_10
Type: pfam
Location: 9391 - 9648 (-)
Type: pfam
Location: 9391 - 9648 (-)
Gene ID: HRGMv2_1015_8_11
Type: TC
Location: 9645 - 10163 (-)
Type: TC
Location: 9645 - 10163 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp959021215
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.