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Cluster: HRGMv2_1015_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1015_13 HRGMv2_1015_13_5 3205 4530 + GH4
TC HRGMv2_1015_13 HRGMv2_1015_13_6 4613 6175 + 4.A.1.1.3
TC HRGMv2_1015_13 HRGMv2_1015_13_7 6406 7659 - 2.A.1.2.25
NULL(UNKNOWN) HRGMv2_1015_13 HRGMv2_1015_13_8 7920 8789 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1015_13 HRGMv2_1015_13_9 8869 9762 + Aldose_epim
TC HRGMv2_1015_13 HRGMv2_1015_13_10 10026 10952 + 3.A.1.3.20
TC HRGMv2_1015_13 HRGMv2_1015_13_11 10962 12110 + 3.A.1.3.20
TC HRGMv2_1015_13 HRGMv2_1015_13_12 12133 12918 + 3.A.1.3.20
Gene ID: HRGMv2_1015_13_5
Type: CAZyme
Location: 3205 - 4530 (+)
Gene ID: HRGMv2_1015_13_6
Type: TC
Location: 4613 - 6175 (+)
Gene ID: HRGMv2_1015_13_7
Type: TC
Location: 6406 - 7659 (-)
Gene ID: HRGMv2_1015_13_8
Type:
Location: 7920 - 8789 (+)
Gene ID: HRGMv2_1015_13_9
Type: pfam
Location: 8869 - 9762 (+)
Gene ID: HRGMv2_1015_13_10
Type: TC
Location: 10026 - 10952 (+)
Gene ID: HRGMv2_1015_13_11
Type: TC
Location: 10962 - 12110 (+)
Gene ID: HRGMv2_1015_13_12
Type: TC
Location: 12133 - 12918 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1015_13_12 vegetarian > vegan 1.28674 0.00110

🧭 Explore Read Mapping of CGC

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