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Cluster: HRGMv2_1014_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1014_6 HRGMv2_1014_6_14 17018 18400 - GH4
TC HRGMv2_1014_6 HRGMv2_1014_6_15 18404 20020 - 4.A.1.1.3
pfam HRGMv2_1014_6 HRGMv2_1014_6_16 20120 20974 - PRD | PRD | CAT_RBD
TC HRGMv2_1014_6 HRGMv2_1014_6_17 20993 21505 - 4.A.1.2.5
STP HRGMv2_1014_6 HRGMv2_1014_6_18 21849 22610 - Fer4
TC HRGMv2_1014_6 HRGMv2_1014_6_19 23229 25478 - 1.I.1.1.3
STP HRGMv2_1014_6 HRGMv2_1014_6_20 26059 27021 + FHA
STP HRGMv2_1014_6 HRGMv2_1014_6_21 27193 29277 + Pkinase
TC HRGMv2_1014_6 HRGMv2_1014_6_22 29850 32192 + 3.A.3.5.15
Gene ID: HRGMv2_1014_6_14
Type: CAZyme
Location: 17018 - 18400 (-)
Gene ID: HRGMv2_1014_6_15
Type: TC
Location: 18404 - 20020 (-)
Gene ID: HRGMv2_1014_6_16
Type: pfam
Location: 20120 - 20974 (-)
Gene ID: HRGMv2_1014_6_17
Type: TC
Location: 20993 - 21505 (-)
Gene ID: HRGMv2_1014_6_18
Type: STP
Location: 21849 - 22610 (-)
Gene ID: HRGMv2_1014_6_19
Type: TC
Location: 23229 - 25478 (-)
Gene ID: HRGMv2_1014_6_20
Type: STP
Location: 26059 - 27021 (+)
Gene ID: HRGMv2_1014_6_21
Type: STP
Location: 27193 - 29277 (+)
Gene ID: HRGMv2_1014_6_22
Type: TC
Location: 29850 - 32192 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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