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Cluster: HRGMv2_1014_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1014_28 HRGMv2_1014_28_3 2428 3849 - GH1
TC HRGMv2_1014_28 HRGMv2_1014_28_4 3924 5702 - 4.A.3.1.1
TF HRGMv2_1014_28 HRGMv2_1014_28_5 5975 6985 + LacI
CAZyme HRGMv2_1014_28 HRGMv2_1014_28_6 7175 8614 - GH1
TC HRGMv2_1014_28 HRGMv2_1014_28_7 8681 10456 - 4.A.3.1.1
TF HRGMv2_1014_28 HRGMv2_1014_28_8 10812 11816 + LacI
TC HRGMv2_1014_28 HRGMv2_1014_28_9 12031 12369 + 4.A.3.1.2
Gene ID: HRGMv2_1014_28_3
Type: CAZyme
Location: 2428 - 3849 (-)
Gene ID: HRGMv2_1014_28_4
Type: TC
Location: 3924 - 5702 (-)
Gene ID: HRGMv2_1014_28_5
Type: TF
Location: 5975 - 6985 (+)
Gene ID: HRGMv2_1014_28_6
Type: CAZyme
Location: 7175 - 8614 (-)
Gene ID: HRGMv2_1014_28_7
Type: TC
Location: 8681 - 10456 (-)
Gene ID: HRGMv2_1014_28_8
Type: TF
Location: 10812 - 11816 (+)
Gene ID: HRGMv2_1014_28_9
Type: TC
Location: 12031 - 12369 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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