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Cluster: HRGMv2_1013_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1013_13 HRGMv2_1013_13_3 2370 3791 - GH1
TC HRGMv2_1013_13 HRGMv2_1013_13_4 3867 5645 - 4.A.3.1.1
TF HRGMv2_1013_13 HRGMv2_1013_13_5 5930 6931 + LacI
TC HRGMv2_1013_13 HRGMv2_1013_13_6 7345 9105 - 4.A.3.1.1
CAZyme HRGMv2_1013_13 HRGMv2_1013_13_7 9282 10724 - GH1
TF HRGMv2_1013_13 HRGMv2_1013_13_8 11066 12103 + LacI
CAZyme HRGMv2_1013_13 HRGMv2_1013_13_9 12371 13810 - GH1
TC HRGMv2_1013_13 HRGMv2_1013_13_10 13877 15652 - 4.A.3.1.1
TF HRGMv2_1013_13 HRGMv2_1013_13_11 16009 17013 + LacI
TC HRGMv2_1013_13 HRGMv2_1013_13_12 17228 17566 + 4.A.3.1.2
Gene ID: HRGMv2_1013_13_3
Type: CAZyme
Location: 2370 - 3791 (-)
Gene ID: HRGMv2_1013_13_4
Type: TC
Location: 3867 - 5645 (-)
Gene ID: HRGMv2_1013_13_5
Type: TF
Location: 5930 - 6931 (+)
Gene ID: HRGMv2_1013_13_6
Type: TC
Location: 7345 - 9105 (-)
Gene ID: HRGMv2_1013_13_7
Type: CAZyme
Location: 9282 - 10724 (-)
Gene ID: HRGMv2_1013_13_8
Type: TF
Location: 11066 - 12103 (+)
Gene ID: HRGMv2_1013_13_9
Type: CAZyme
Location: 12371 - 13810 (-)
Gene ID: HRGMv2_1013_13_10
Type: TC
Location: 13877 - 15652 (-)
Gene ID: HRGMv2_1013_13_11
Type: TF
Location: 16009 - 17013 (+)
Gene ID: HRGMv2_1013_13_12
Type: TC
Location: 17228 - 17566 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1013_13_8 vegetarian > omnivore 1.01853 0.02242

🧭 Explore Read Mapping of CGC

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