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Cluster: HRGMv2_1013_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1013_7 HRGMv2_1013_7_7 4724 5893 - CE9
STP HRGMv2_1013_7 HRGMv2_1013_7_8 6011 7177 - SIS | SIS
TF HRGMv2_1013_7 HRGMv2_1013_7_9 7292 8023 - GntR
TC HRGMv2_1013_7 HRGMv2_1013_7_10 8209 9291 - 4.A.6.1.4
TC HRGMv2_1013_7 HRGMv2_1013_7_11 9281 10081 - 4.A.6.1.4
TC HRGMv2_1013_7 HRGMv2_1013_7_12 10172 10654 - 4.A.6.1.4
pfam HRGMv2_1013_7 HRGMv2_1013_7_13 10691 10972 - YajC
TC HRGMv2_1013_7 HRGMv2_1013_7_14 10972 11415 - 4.A.6.1.16
Gene ID: HRGMv2_1013_7_7
Type: CAZyme
Location: 4724 - 5893 (-)
Gene ID: HRGMv2_1013_7_8
Type: STP
Location: 6011 - 7177 (-)
Gene ID: HRGMv2_1013_7_9
Type: TF
Location: 7292 - 8023 (-)
Gene ID: HRGMv2_1013_7_10
Type: TC
Location: 8209 - 9291 (-)
Gene ID: HRGMv2_1013_7_11
Type: TC
Location: 9281 - 10081 (-)
Gene ID: HRGMv2_1013_7_12
Type: TC
Location: 10172 - 10654 (-)
Gene ID: HRGMv2_1013_7_13
Type: pfam
Location: 10691 - 10972 (-)
Gene ID: HRGMv2_1013_7_14
Type: TC
Location: 10972 - 11415 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1013_7_13 vegan > omnivore 1.00342 0.00863

🧭 Explore Read Mapping of CGC

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