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Cluster: HRGMv2_1012_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1012_5 HRGMv2_1012_5_82 82878 83321 + 4.A.6.1.16
pfam HRGMv2_1012_5 HRGMv2_1012_5_83 83321 83602 + YajC
TC HRGMv2_1012_5 HRGMv2_1012_5_84 83639 84121 + 4.A.6.1.4
TC HRGMv2_1012_5 HRGMv2_1012_5_85 84212 85012 + 4.A.6.1.4
TC HRGMv2_1012_5 HRGMv2_1012_5_86 85002 86084 + 4.A.6.1.4
TF HRGMv2_1012_5 HRGMv2_1012_5_87 86269 87000 + GntR
STP HRGMv2_1012_5 HRGMv2_1012_5_88 87115 88281 + SIS | SIS
CAZyme HRGMv2_1012_5 HRGMv2_1012_5_89 88399 89568 + CE9
Gene ID: HRGMv2_1012_5_82
Type: TC
Location: 82878 - 83321 (+)
Gene ID: HRGMv2_1012_5_83
Type: pfam
Location: 83321 - 83602 (+)
Gene ID: HRGMv2_1012_5_84
Type: TC
Location: 83639 - 84121 (+)
Gene ID: HRGMv2_1012_5_85
Type: TC
Location: 84212 - 85012 (+)
Gene ID: HRGMv2_1012_5_86
Type: TC
Location: 85002 - 86084 (+)
Gene ID: HRGMv2_1012_5_87
Type: TF
Location: 86269 - 87000 (+)
Gene ID: HRGMv2_1012_5_88
Type: STP
Location: 87115 - 88281 (+)
Gene ID: HRGMv2_1012_5_89
Type: CAZyme
Location: 88399 - 89568 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1012_5_83 vegan > omnivore 1.08254 0.00566

🧭 Explore Read Mapping of CGC

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