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Cluster: HRGMv2_1012_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1012_5 HRGMv2_1012_5_50 50087 51487 + GH1
TC HRGMv2_1012_5 HRGMv2_1012_5_51 51608 52960 + 4.A.3.2.2
TC HRGMv2_1012_5 HRGMv2_1012_5_52 53114 53416 + 4.A.3.2.9
TC HRGMv2_1012_5 HRGMv2_1012_5_53 53426 53758 + 4.A.3.2.3
STP HRGMv2_1012_5 HRGMv2_1012_5_54 54000 54953 + Glucokinase
pfam HRGMv2_1012_5 HRGMv2_1012_5_55 55120 56043 + DHH | DHHA2
TC HRGMv2_1012_5 HRGMv2_1012_5_56 56311 57669 + 2.A.33.1.1
Gene ID: HRGMv2_1012_5_50
Type: CAZyme
Location: 50087 - 51487 (+)
Gene ID: HRGMv2_1012_5_51
Type: TC
Location: 51608 - 52960 (+)
Gene ID: HRGMv2_1012_5_52
Type: TC
Location: 53114 - 53416 (+)
Gene ID: HRGMv2_1012_5_53
Type: TC
Location: 53426 - 53758 (+)
Gene ID: HRGMv2_1012_5_54
Type: STP
Location: 54000 - 54953 (+)
Gene ID: HRGMv2_1012_5_55
Type: pfam
Location: 55120 - 56043 (+)
Gene ID: HRGMv2_1012_5_56
Type: TC
Location: 56311 - 57669 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1012_5_52 vegan > omnivore 1.03890 0.00566

🧭 Explore Read Mapping of CGC

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