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Cluster: HRGMv2_1012_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1012_2 HRGMv2_1012_2_153 158749 158931 - 9.B.97.6.3
TC HRGMv2_1012_2 HRGMv2_1012_2_154 159138 159905 - 3.A.1.103.1
TC HRGMv2_1012_2 HRGMv2_1012_2_155 159917 160762 - 3.A.1.103.6
pfam HRGMv2_1012_2 HRGMv2_1012_2_156 160852 162516 - DUF6020
CAZyme HRGMv2_1012_2 HRGMv2_1012_2_157 162785 163756 + GT81
CAZyme HRGMv2_1012_2 HRGMv2_1012_2_158 163763 164731 + GT2
TC HRGMv2_1012_2 HRGMv2_1012_2_159 164715 167123 + 9.B.144.1.5
Gene ID: HRGMv2_1012_2_153
Type: TC
Location: 158749 - 158931 (-)
Gene ID: HRGMv2_1012_2_154
Type: TC
Location: 159138 - 159905 (-)
Gene ID: HRGMv2_1012_2_155
Type: TC
Location: 159917 - 160762 (-)
Gene ID: HRGMv2_1012_2_156
Type: pfam
Location: 160852 - 162516 (-)
Gene ID: HRGMv2_1012_2_157
Type: CAZyme
Location: 162785 - 163756 (+)
Gene ID: HRGMv2_1012_2_158
Type: CAZyme
Location: 163763 - 164731 (+)
Gene ID: HRGMv2_1012_2_159
Type: TC
Location: 164715 - 167123 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1012_2_158 vegan > omnivore 1.08175 0.00566

🧭 Explore Read Mapping of CGC

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