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Cluster: HRGMv2_1012_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1012_26 HRGMv2_1012_26_10 11737 13119 - GH4
TC HRGMv2_1012_26 HRGMv2_1012_26_11 13123 14739 - 4.A.1.1.3
pfam HRGMv2_1012_26 HRGMv2_1012_26_12 14839 15705 - PRD | PRD | CAT_RBD
TC HRGMv2_1012_26 HRGMv2_1012_26_13 15712 16224 - 4.A.1.2.5
TC HRGMv2_1012_26 HRGMv2_1012_26_14 16673 18928 - 1.I.1.1.3
STP HRGMv2_1012_26 HRGMv2_1012_26_15 19527 20489 + FHA
STP HRGMv2_1012_26 HRGMv2_1012_26_16 20661 22745 + Pkinase
TC HRGMv2_1012_26 HRGMv2_1012_26_17 23076 25415 + 3.A.3.5.15
Gene ID: HRGMv2_1012_26_10
Type: CAZyme
Location: 11737 - 13119 (-)
Gene ID: HRGMv2_1012_26_11
Type: TC
Location: 13123 - 14739 (-)
Gene ID: HRGMv2_1012_26_12
Type: pfam
Location: 14839 - 15705 (-)
Gene ID: HRGMv2_1012_26_13
Type: TC
Location: 15712 - 16224 (-)
Gene ID: HRGMv2_1012_26_14
Type: TC
Location: 16673 - 18928 (-)
Gene ID: HRGMv2_1012_26_15
Type: STP
Location: 19527 - 20489 (+)
Gene ID: HRGMv2_1012_26_16
Type: STP
Location: 20661 - 22745 (+)
Gene ID: HRGMv2_1012_26_17
Type: TC
Location: 23076 - 25415 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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