dbCAN Logo

Cluster: HRGMv2_1012_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1012_21 HRGMv2_1012_21_11 15125 17575 - 4.A.1.1.8
NULL(UNKNOWN) HRGMv2_1012_21 HRGMv2_1012_21_12 17597 17716 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_1012_21 HRGMv2_1012_21_13 17800 18519 + GntR
TC HRGMv2_1012_21 HRGMv2_1012_21_14 18830 20146 + 3.A.1.1.45
TC HRGMv2_1012_21 HRGMv2_1012_21_15 20234 21088 + 3.A.1.1.45
TC HRGMv2_1012_21 HRGMv2_1012_21_16 21088 21927 + 3.A.1.1.45
TC HRGMv2_1012_21 HRGMv2_1012_21_17 21996 23195 + 3.A.1.1.22
CAZyme HRGMv2_1012_21 HRGMv2_1012_21_18 23653 25920 - GT35
CAZyme HRGMv2_1012_21 HRGMv2_1012_21_19 26049 27554 - GH77
Gene ID: HRGMv2_1012_21_11
Type: TC
Location: 15125 - 17575 (-)
Gene ID: HRGMv2_1012_21_12
Type:
Location: 17597 - 17716 (+)
Gene ID: HRGMv2_1012_21_13
Type: TF
Location: 17800 - 18519 (+)
Gene ID: HRGMv2_1012_21_14
Type: TC
Location: 18830 - 20146 (+)
Gene ID: HRGMv2_1012_21_15
Type: TC
Location: 20234 - 21088 (+)
Gene ID: HRGMv2_1012_21_16
Type: TC
Location: 21088 - 21927 (+)
Gene ID: HRGMv2_1012_21_17
Type: TC
Location: 21996 - 23195 (+)
Gene ID: HRGMv2_1012_21_18
Type: CAZyme
Location: 23653 - 25920 (-)
Gene ID: HRGMv2_1012_21_19
Type: CAZyme
Location: 26049 - 27554 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List