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Cluster: HRGMv2_1011_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1011_17 HRGMv2_1011_17_8 6235 6573 - 4.A.3.1.2
TF HRGMv2_1011_17 HRGMv2_1011_17_9 6789 7793 - LacI
TC HRGMv2_1011_17 HRGMv2_1011_17_10 8151 9914 + 4.A.3.1.1
CAZyme HRGMv2_1011_17 HRGMv2_1011_17_11 9981 11420 + GH1
TF HRGMv2_1011_17 HRGMv2_1011_17_12 11685 12722 - LacI
CAZyme HRGMv2_1011_17 HRGMv2_1011_17_13 13064 14506 + GH1
TC HRGMv2_1011_17 HRGMv2_1011_17_14 14683 16443 + 4.A.3.1.1
TF HRGMv2_1011_17 HRGMv2_1011_17_15 16697 17707 - LacI
TC HRGMv2_1011_17 HRGMv2_1011_17_16 17983 19761 + 4.A.3.1.1
CAZyme HRGMv2_1011_17 HRGMv2_1011_17_17 19838 21259 + GH1
Gene ID: HRGMv2_1011_17_8
Type: TC
Location: 6235 - 6573 (-)
Gene ID: HRGMv2_1011_17_9
Type: TF
Location: 6789 - 7793 (-)
Gene ID: HRGMv2_1011_17_10
Type: TC
Location: 8151 - 9914 (+)
Gene ID: HRGMv2_1011_17_11
Type: CAZyme
Location: 9981 - 11420 (+)
Gene ID: HRGMv2_1011_17_12
Type: TF
Location: 11685 - 12722 (-)
Gene ID: HRGMv2_1011_17_13
Type: CAZyme
Location: 13064 - 14506 (+)
Gene ID: HRGMv2_1011_17_14
Type: TC
Location: 14683 - 16443 (+)
Gene ID: HRGMv2_1011_17_15
Type: TF
Location: 16697 - 17707 (-)
Gene ID: HRGMv2_1011_17_16
Type: TC
Location: 17983 - 19761 (+)
Gene ID: HRGMv2_1011_17_17
Type: CAZyme
Location: 19838 - 21259 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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