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Cluster: HRGMv2_1011_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1011_16 HRGMv2_1011_16_3 1516 2442 - CE7
TC HRGMv2_1011_16 HRGMv2_1011_16_4 2574 3401 - 3.A.1.5.27
TC HRGMv2_1011_16 HRGMv2_1011_16_5 3402 5417 - 3.A.1.5.25
TC HRGMv2_1011_16 HRGMv2_1011_16_6 5421 6377 - 3.A.1.5.38
TC HRGMv2_1011_16 HRGMv2_1011_16_7 6535 8148 - 3.A.1.5.27
pfam HRGMv2_1011_16 HRGMv2_1011_16_8 8513 10453 - GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_1011_16 HRGMv2_1011_16_9 10460 12142 - 2.A.66.4.4
Gene ID: HRGMv2_1011_16_3
Type: CAZyme
Location: 1516 - 2442 (-)
Gene ID: HRGMv2_1011_16_4
Type: TC
Location: 2574 - 3401 (-)
Gene ID: HRGMv2_1011_16_5
Type: TC
Location: 3402 - 5417 (-)
Gene ID: HRGMv2_1011_16_6
Type: TC
Location: 5421 - 6377 (-)
Gene ID: HRGMv2_1011_16_7
Type: TC
Location: 6535 - 8148 (-)
Gene ID: HRGMv2_1011_16_8
Type: pfam
Location: 8513 - 10453 (-)
Gene ID: HRGMv2_1011_16_9
Type: TC
Location: 10460 - 12142 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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