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Cluster: HRGMv2_1011_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1011_12 HRGMv2_1011_12_7 4352 5521 - CE9
STP HRGMv2_1011_12 HRGMv2_1011_12_8 5640 6806 - SIS | SIS
TF HRGMv2_1011_12 HRGMv2_1011_12_9 6921 7652 - GntR
TC HRGMv2_1011_12 HRGMv2_1011_12_10 7838 8920 - 4.A.6.1.4
TC HRGMv2_1011_12 HRGMv2_1011_12_11 8910 9710 - 4.A.6.1.4
TC HRGMv2_1011_12 HRGMv2_1011_12_12 9801 10283 - 4.A.6.1.4
pfam HRGMv2_1011_12 HRGMv2_1011_12_13 10320 10601 - YajC
TC HRGMv2_1011_12 HRGMv2_1011_12_14 10601 11044 - 4.A.6.1.16
Gene ID: HRGMv2_1011_12_7
Type: CAZyme
Location: 4352 - 5521 (-)
Gene ID: HRGMv2_1011_12_8
Type: STP
Location: 5640 - 6806 (-)
Gene ID: HRGMv2_1011_12_9
Type: TF
Location: 6921 - 7652 (-)
Gene ID: HRGMv2_1011_12_10
Type: TC
Location: 7838 - 8920 (-)
Gene ID: HRGMv2_1011_12_11
Type: TC
Location: 8910 - 9710 (-)
Gene ID: HRGMv2_1011_12_12
Type: TC
Location: 9801 - 10283 (-)
Gene ID: HRGMv2_1011_12_13
Type: pfam
Location: 10320 - 10601 (-)
Gene ID: HRGMv2_1011_12_14
Type: TC
Location: 10601 - 11044 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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