Cluster: HRGMv2_1011_CGC1
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1011
- CGC Family ID: CGCFAM_00024
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1011_10 | HRGMv2_1011_10_5 | 5489 | 6727 | - | GH13_20 |
| NULL(UNKNOWN) | HRGMv2_1011_10 | HRGMv2_1011_10_6 | 6764 | 6865 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1011_10 | HRGMv2_1011_10_7 | 7019 | 8215 | - | 2.A.1.2.18 |
| TC | HRGMv2_1011_10 | HRGMv2_1011_10_8 | 8337 | 10697 | - | 9.A.8.1.6 |
| NULL(UNKNOWN) | HRGMv2_1011_10 | HRGMv2_1011_10_9 | 10768 | 11109 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| peptidase | HRGMv2_1011_10 | HRGMv2_1011_10_10 | 11238 | 12137 | - | S09.UPW |
| TC | HRGMv2_1011_10 | HRGMv2_1011_10_11 | 12380 | 12943 | + | 4.A.1.2.6 |
| pfam | HRGMv2_1011_10 | HRGMv2_1011_10_12 | 13125 | 14528 | + | tRNA-synt_2 | tRNA_anti-codon |
| NULL(UNKNOWN) | HRGMv2_1011_10 | HRGMv2_1011_10_13 | 14787 | 15572 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1011_10 | HRGMv2_1011_10_14 | 15733 | 16713 | + | 3.A.1.34.1 |
| TC | HRGMv2_1011_10 | HRGMv2_1011_10_15 | 16917 | 17840 | + | 3.A.1.34.1 |
| TC | HRGMv2_1011_10 | HRGMv2_1011_10_16 | 17833 | 18627 | + | 3.A.1.34.1 |
Gene ID: HRGMv2_1011_10_5
Type: CAZyme
Location: 5489 - 6727 (-)
Type: CAZyme
Location: 5489 - 6727 (-)
Gene ID: HRGMv2_1011_10_6
Type:
Location: 6764 - 6865 (-)
Type:
Location: 6764 - 6865 (-)
Gene ID: HRGMv2_1011_10_7
Type: TC
Location: 7019 - 8215 (-)
Type: TC
Location: 7019 - 8215 (-)
Gene ID: HRGMv2_1011_10_8
Type: TC
Location: 8337 - 10697 (-)
Type: TC
Location: 8337 - 10697 (-)
Gene ID: HRGMv2_1011_10_9
Type:
Location: 10768 - 11109 (-)
Type:
Location: 10768 - 11109 (-)
Gene ID: HRGMv2_1011_10_10
Type: peptidase
Location: 11238 - 12137 (-)
Type: peptidase
Location: 11238 - 12137 (-)
Gene ID: HRGMv2_1011_10_11
Type: TC
Location: 12380 - 12943 (+)
Type: TC
Location: 12380 - 12943 (+)
Gene ID: HRGMv2_1011_10_12
Type: pfam
Location: 13125 - 14528 (+)
Type: pfam
Location: 13125 - 14528 (+)
Gene ID: HRGMv2_1011_10_13
Type:
Location: 14787 - 15572 (+)
Type:
Location: 14787 - 15572 (+)
Gene ID: HRGMv2_1011_10_14
Type: TC
Location: 15733 - 16713 (+)
Type: TC
Location: 15733 - 16713 (+)
Gene ID: HRGMv2_1011_10_15
Type: TC
Location: 16917 - 17840 (+)
Type: TC
Location: 16917 - 17840 (+)
Gene ID: HRGMv2_1011_10_16
Type: TC
Location: 17833 - 18627 (+)
Type: TC
Location: 17833 - 18627 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.