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Cluster: HRGMv2_1010_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1010_40 HRGMv2_1010_40_4 3432 4097 + 9.B.18.1.2
CAZyme HRGMv2_1010_40 HRGMv2_1010_40_5 4098 4931 + GT2
CAZyme HRGMv2_1010_40 HRGMv2_1010_40_6 4936 5928 + GT2
pfam HRGMv2_1010_40 HRGMv2_1010_40_7 6123 7238 + EpsG
CAZyme HRGMv2_1010_40 HRGMv2_1010_40_8 7231 8226 + GT2
CAZyme HRGMv2_1010_40 HRGMv2_1010_40_9 8630 9790 + GT2
Gene ID: HRGMv2_1010_40_4
Type: TC
Location: 3432 - 4097 (+)
Gene ID: HRGMv2_1010_40_5
Type: CAZyme
Location: 4098 - 4931 (+)
Gene ID: HRGMv2_1010_40_6
Type: CAZyme
Location: 4936 - 5928 (+)
Gene ID: HRGMv2_1010_40_7
Type: pfam
Location: 6123 - 7238 (+)
Gene ID: HRGMv2_1010_40_8
Type: CAZyme
Location: 7231 - 8226 (+)
Gene ID: HRGMv2_1010_40_9
Type: CAZyme
Location: 8630 - 9790 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1010_40_4 vegan > omnivore 1.30054 0.00701

🧭 Explore Read Mapping of CGC

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