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Cluster: HRGMv2_1010_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1010_12 HRGMv2_1010_12_6 5071 6240 - CE9
STP HRGMv2_1010_12 HRGMv2_1010_12_7 6359 7525 - SIS | SIS
TF HRGMv2_1010_12 HRGMv2_1010_12_8 7640 8371 - GntR
TC HRGMv2_1010_12 HRGMv2_1010_12_9 8557 9639 - 4.A.6.1.4
TC HRGMv2_1010_12 HRGMv2_1010_12_10 9629 10429 - 4.A.6.1.4
TC HRGMv2_1010_12 HRGMv2_1010_12_11 10520 11002 - 4.A.6.1.4
pfam HRGMv2_1010_12 HRGMv2_1010_12_12 11039 11320 - YajC
TC HRGMv2_1010_12 HRGMv2_1010_12_13 11320 11763 - 4.A.6.1.16
Gene ID: HRGMv2_1010_12_6
Type: CAZyme
Location: 5071 - 6240 (-)
Gene ID: HRGMv2_1010_12_7
Type: STP
Location: 6359 - 7525 (-)
Gene ID: HRGMv2_1010_12_8
Type: TF
Location: 7640 - 8371 (-)
Gene ID: HRGMv2_1010_12_9
Type: TC
Location: 8557 - 9639 (-)
Gene ID: HRGMv2_1010_12_10
Type: TC
Location: 9629 - 10429 (-)
Gene ID: HRGMv2_1010_12_11
Type: TC
Location: 10520 - 11002 (-)
Gene ID: HRGMv2_1010_12_12
Type: pfam
Location: 11039 - 11320 (-)
Gene ID: HRGMv2_1010_12_13
Type: TC
Location: 11320 - 11763 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1010_12_12 vegan > omnivore 1.00589 0.00701

🧭 Explore Read Mapping of CGC

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