dbCAN HGM

Cluster: HRGMv2_1009_CGC8

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	HRGMv2_1009_18	HRGMv2_1009_18_25	17477	18244	-	3.A.1.103.1
TC	HRGMv2_1009_18	HRGMv2_1009_18_26	18257	19102	-	3.A.1.103.6
CAZyme	HRGMv2_1009_18	HRGMv2_1009_18_27	19264	20193	+	GT81
CAZyme	HRGMv2_1009_18	HRGMv2_1009_18_28	20225	22066	-	GT2
pfam	HRGMv2_1009_18	HRGMv2_1009_18_29	22099	23286	-	LicD
CAZyme	HRGMv2_1009_18	HRGMv2_1009_18_30	23386	25221	-	GT2

Gene ID: HRGMv2_1009_18_25
Type: TC
Location: 17477 - 18244 (-)

Gene ID: HRGMv2_1009_18_26
Type: TC
Location: 18257 - 19102 (-)

Gene ID: HRGMv2_1009_18_27
Type: CAZyme
Location: 19264 - 20193 (+)

Gene ID: HRGMv2_1009_18_28
Type: CAZyme
Location: 20225 - 22066 (-)

Gene ID: HRGMv2_1009_18_29
Type: pfam
Location: 22099 - 23286 (-)

Gene ID: HRGMv2_1009_18_30
Type: CAZyme
Location: 23386 - 25221 (-)

Taxonomic Lineage

Domain

→

Phylum

→

Class

→

Order

→

Family

→

Genus

→

Species

Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_1009_18_26	vegan > omnivore	2.41143	0.01057
HRGMv2_1009_18_27	vegan > omnivore	1.71184	0.01057
HRGMv2_1009_18_28	vegan > omnivore	17.64972	0.01057
HRGMv2_1009_18_28	vegetarian > omnivore	13.35320	0.02617
HRGMv2_1009_18_29	vegan > omnivore	17.83127	0.01057
HRGMv2_1009_18_30	vegan > omnivore	10.08009	0.01057