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Cluster: HRGMv2_1009_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1009_1 HRGMv2_1009_1_18 20091 21260 - CE9
STP HRGMv2_1009_1 HRGMv2_1009_1_19 21378 22544 - SIS | SIS
TF HRGMv2_1009_1 HRGMv2_1009_1_20 22659 23390 - GntR
TC HRGMv2_1009_1 HRGMv2_1009_1_21 23576 24658 - 4.A.6.1.4
TC HRGMv2_1009_1 HRGMv2_1009_1_22 24648 25448 - 4.A.6.1.4
TC HRGMv2_1009_1 HRGMv2_1009_1_23 25539 26021 - 4.A.6.1.4
pfam HRGMv2_1009_1 HRGMv2_1009_1_24 26058 26339 - YajC
TC HRGMv2_1009_1 HRGMv2_1009_1_25 26339 26782 - 4.A.6.1.16
Gene ID: HRGMv2_1009_1_18
Type: CAZyme
Location: 20091 - 21260 (-)
Gene ID: HRGMv2_1009_1_19
Type: STP
Location: 21378 - 22544 (-)
Gene ID: HRGMv2_1009_1_20
Type: TF
Location: 22659 - 23390 (-)
Gene ID: HRGMv2_1009_1_21
Type: TC
Location: 23576 - 24658 (-)
Gene ID: HRGMv2_1009_1_22
Type: TC
Location: 24648 - 25448 (-)
Gene ID: HRGMv2_1009_1_23
Type: TC
Location: 25539 - 26021 (-)
Gene ID: HRGMv2_1009_1_24
Type: pfam
Location: 26058 - 26339 (-)
Gene ID: HRGMv2_1009_1_25
Type: TC
Location: 26339 - 26782 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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