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Cluster: HRGMv2_1009_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1009_30 HRGMv2_1009_30_2 596 2101 + GH77
CAZyme HRGMv2_1009_30 HRGMv2_1009_30_3 2230 4497 + GT35
TC HRGMv2_1009_30 HRGMv2_1009_30_4 4955 6154 - 3.A.1.1.22
TC HRGMv2_1009_30 HRGMv2_1009_30_5 6223 7062 - 3.A.1.1.45
TC HRGMv2_1009_30 HRGMv2_1009_30_6 7062 7916 - 3.A.1.1.45
TC HRGMv2_1009_30 HRGMv2_1009_30_7 8004 9320 - 3.A.1.1.45
TF HRGMv2_1009_30 HRGMv2_1009_30_8 9627 10346 - GntR
TC HRGMv2_1009_30 HRGMv2_1009_30_9 10609 13026 + 4.A.1.1.8
Gene ID: HRGMv2_1009_30_2
Type: CAZyme
Location: 596 - 2101 (+)
Gene ID: HRGMv2_1009_30_3
Type: CAZyme
Location: 2230 - 4497 (+)
Gene ID: HRGMv2_1009_30_4
Type: TC
Location: 4955 - 6154 (-)
Gene ID: HRGMv2_1009_30_5
Type: TC
Location: 6223 - 7062 (-)
Gene ID: HRGMv2_1009_30_6
Type: TC
Location: 7062 - 7916 (-)
Gene ID: HRGMv2_1009_30_7
Type: TC
Location: 8004 - 9320 (-)
Gene ID: HRGMv2_1009_30_8
Type: TF
Location: 9627 - 10346 (-)
Gene ID: HRGMv2_1009_30_9
Type: TC
Location: 10609 - 13026 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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