Cluster: HRGMv2_1009_CGC10
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1009
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1009_27 | HRGMv2_1009_27_18 | 21499 | 21837 | - | 4.A.3.1.2 |
| TF | HRGMv2_1009_27 | HRGMv2_1009_27_19 | 22052 | 23056 | - | LacI |
| TC | HRGMv2_1009_27 | HRGMv2_1009_27_20 | 23414 | 25189 | + | 4.A.3.1.1 |
| CAZyme | HRGMv2_1009_27 | HRGMv2_1009_27_21 | 25256 | 26695 | + | GH1 |
| TF | HRGMv2_1009_27 | HRGMv2_1009_27_22 | 26973 | 28010 | - | LacI |
| CAZyme | HRGMv2_1009_27 | HRGMv2_1009_27_23 | 28352 | 29794 | + | GH1 |
Gene ID: HRGMv2_1009_27_18
Type: TC
Location: 21499 - 21837 (-)
Type: TC
Location: 21499 - 21837 (-)
Gene ID: HRGMv2_1009_27_19
Type: TF
Location: 22052 - 23056 (-)
Type: TF
Location: 22052 - 23056 (-)
Gene ID: HRGMv2_1009_27_20
Type: TC
Location: 23414 - 25189 (+)
Type: TC
Location: 23414 - 25189 (+)
Gene ID: HRGMv2_1009_27_21
Type: CAZyme
Location: 25256 - 26695 (+)
Type: CAZyme
Location: 25256 - 26695 (+)
Gene ID: HRGMv2_1009_27_22
Type: TF
Location: 26973 - 28010 (-)
Type: TF
Location: 26973 - 28010 (-)
Gene ID: HRGMv2_1009_27_23
Type: CAZyme
Location: 28352 - 29794 (+)
Type: CAZyme
Location: 28352 - 29794 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp938045065
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1009_27_22 | vegetarian > omnivore | 1.05332 | 0.01379 |