Cluster: HRGMv2_1008_CGC9
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1008
- CGC Family ID: CGCFAM_00019
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1008_9 | HRGMv2_1008_9_44 | 57282 | 58664 | - | GH4 |
| TC | HRGMv2_1008_9 | HRGMv2_1008_9_45 | 58668 | 60284 | - | 4.A.1.1.3 |
| pfam | HRGMv2_1008_9 | HRGMv2_1008_9_46 | 60438 | 61250 | - | PRD | CAT_RBD |
| TC | HRGMv2_1008_9 | HRGMv2_1008_9_47 | 61257 | 61769 | - | 4.A.1.2.2 |
| STP | HRGMv2_1008_9 | HRGMv2_1008_9_48 | 62113 | 62874 | - | Fer4 |
| TC | HRGMv2_1008_9 | HRGMv2_1008_9_49 | 63498 | 65747 | - | 1.I.1.1.3 |
| TC | HRGMv2_1008_9 | HRGMv2_1008_9_50 | 66308 | 68650 | + | 3.A.3.5.15 |
Gene ID: HRGMv2_1008_9_44
Type: CAZyme
Location: 57282 - 58664 (-)
Type: CAZyme
Location: 57282 - 58664 (-)
Gene ID: HRGMv2_1008_9_45
Type: TC
Location: 58668 - 60284 (-)
Type: TC
Location: 58668 - 60284 (-)
Gene ID: HRGMv2_1008_9_46
Type: pfam
Location: 60438 - 61250 (-)
Type: pfam
Location: 60438 - 61250 (-)
Gene ID: HRGMv2_1008_9_47
Type: TC
Location: 61257 - 61769 (-)
Type: TC
Location: 61257 - 61769 (-)
Gene ID: HRGMv2_1008_9_48
Type: STP
Location: 62113 - 62874 (-)
Type: STP
Location: 62113 - 62874 (-)
Gene ID: HRGMv2_1008_9_49
Type: TC
Location: 63498 - 65747 (-)
Type: TC
Location: 63498 - 65747 (-)
Gene ID: HRGMv2_1008_9_50
Type: TC
Location: 66308 - 68650 (+)
Type: TC
Location: 66308 - 68650 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.