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Cluster: HRGMv2_1008_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1008_22 HRGMv2_1008_22_11 14707 17157 - 4.A.1.1.8
TF HRGMv2_1008_22 HRGMv2_1008_22_12 17387 18106 + GntR
TC HRGMv2_1008_22 HRGMv2_1008_22_13 18413 19729 + 3.A.1.1.45
TC HRGMv2_1008_22 HRGMv2_1008_22_14 19817 20671 + 3.A.1.1.45
TC HRGMv2_1008_22 HRGMv2_1008_22_15 20671 21510 + 3.A.1.1.45
TC HRGMv2_1008_22 HRGMv2_1008_22_16 21579 22778 + 3.A.1.1.22
CAZyme HRGMv2_1008_22 HRGMv2_1008_22_17 23235 25502 - GT35
CAZyme HRGMv2_1008_22 HRGMv2_1008_22_18 25631 27136 - GH77
Gene ID: HRGMv2_1008_22_11
Type: TC
Location: 14707 - 17157 (-)
Gene ID: HRGMv2_1008_22_12
Type: TF
Location: 17387 - 18106 (+)
Gene ID: HRGMv2_1008_22_13
Type: TC
Location: 18413 - 19729 (+)
Gene ID: HRGMv2_1008_22_14
Type: TC
Location: 19817 - 20671 (+)
Gene ID: HRGMv2_1008_22_15
Type: TC
Location: 20671 - 21510 (+)
Gene ID: HRGMv2_1008_22_16
Type: TC
Location: 21579 - 22778 (+)
Gene ID: HRGMv2_1008_22_17
Type: CAZyme
Location: 23235 - 25502 (-)
Gene ID: HRGMv2_1008_22_18
Type: CAZyme
Location: 25631 - 27136 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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