Cluster: HRGMv2_1008_CGC13
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_1008
- CGC Family ID: CGCFAM_01159
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1008_12 | HRGMv2_1008_12_24 | 27183 | 28991 | + | GH154 |
| pfam | HRGMv2_1008_12 | HRGMv2_1008_12_25 | 29147 | 29578 | + | EIIA-man |
| TC | HRGMv2_1008_12 | HRGMv2_1008_12_26 | 29623 | 30111 | + | 4.A.6.1.3 |
| TC | HRGMv2_1008_12 | HRGMv2_1008_12_27 | 30191 | 31087 | + | 4.A.6.1.6 |
| TC | HRGMv2_1008_12 | HRGMv2_1008_12_28 | 31080 | 31943 | + | 4.A.6.1.19 |
| NULL(UNKNOWN) | HRGMv2_1008_12 | HRGMv2_1008_12_29 | 32022 | 32675 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1008_12 | HRGMv2_1008_12_30 | 32629 | 33807 | + | GH88 |
| pfam | HRGMv2_1008_12 | HRGMv2_1008_12_31 | 33902 | 34759 | + | CN_hydrolase |
| CAZyme | HRGMv2_1008_12 | HRGMv2_1008_12_32 | 34756 | 36387 | + | CBM91 | GH43_11 |
| pfam | HRGMv2_1008_12 | HRGMv2_1008_12_33 | 36400 | 37200 | + | DUF7402 |
| CAZyme | HRGMv2_1008_12 | HRGMv2_1008_12_34 | 37285 | 38508 | + | GH28 |
| CAZyme | HRGMv2_1008_12 | HRGMv2_1008_12_35 | 38511 | 40223 | + | GH154 |
| pfam | HRGMv2_1008_12 | HRGMv2_1008_12_36 | 40530 | 41783 | + | SLFN_AlbA_2 | HATPase_c_4 |
| pfam | HRGMv2_1008_12 | HRGMv2_1008_12_37 | 41862 | 42953 | - | AAA_16 |
| TC | HRGMv2_1008_12 | HRGMv2_1008_12_38 | 43088 | 43768 | - | 2.A.115.2.9 |
| pfam | HRGMv2_1008_12 | HRGMv2_1008_12_39 | 44261 | 44695 | + | HIT |
| TC | HRGMv2_1008_12 | HRGMv2_1008_12_40 | 44763 | 46097 | + | 2.A.8.1.3 |
Gene ID: HRGMv2_1008_12_24
Type: CAZyme
Location: 27183 - 28991 (+)
Type: CAZyme
Location: 27183 - 28991 (+)
Gene ID: HRGMv2_1008_12_25
Type: pfam
Location: 29147 - 29578 (+)
Type: pfam
Location: 29147 - 29578 (+)
Gene ID: HRGMv2_1008_12_26
Type: TC
Location: 29623 - 30111 (+)
Type: TC
Location: 29623 - 30111 (+)
Gene ID: HRGMv2_1008_12_27
Type: TC
Location: 30191 - 31087 (+)
Type: TC
Location: 30191 - 31087 (+)
Gene ID: HRGMv2_1008_12_28
Type: TC
Location: 31080 - 31943 (+)
Type: TC
Location: 31080 - 31943 (+)
Gene ID: HRGMv2_1008_12_29
Type:
Location: 32022 - 32675 (+)
Type:
Location: 32022 - 32675 (+)
Gene ID: HRGMv2_1008_12_30
Type: CAZyme
Location: 32629 - 33807 (+)
Type: CAZyme
Location: 32629 - 33807 (+)
Gene ID: HRGMv2_1008_12_31
Type: pfam
Location: 33902 - 34759 (+)
Type: pfam
Location: 33902 - 34759 (+)
Gene ID: HRGMv2_1008_12_32
Type: CAZyme
Location: 34756 - 36387 (+)
Type: CAZyme
Location: 34756 - 36387 (+)
Gene ID: HRGMv2_1008_12_33
Type: pfam
Location: 36400 - 37200 (+)
Type: pfam
Location: 36400 - 37200 (+)
Gene ID: HRGMv2_1008_12_34
Type: CAZyme
Location: 37285 - 38508 (+)
Type: CAZyme
Location: 37285 - 38508 (+)
Gene ID: HRGMv2_1008_12_35
Type: CAZyme
Location: 38511 - 40223 (+)
Type: CAZyme
Location: 38511 - 40223 (+)
Gene ID: HRGMv2_1008_12_36
Type: pfam
Location: 40530 - 41783 (+)
Type: pfam
Location: 40530 - 41783 (+)
Gene ID: HRGMv2_1008_12_37
Type: pfam
Location: 41862 - 42953 (-)
Type: pfam
Location: 41862 - 42953 (-)
Gene ID: HRGMv2_1008_12_38
Type: TC
Location: 43088 - 43768 (-)
Type: TC
Location: 43088 - 43768 (-)
Gene ID: HRGMv2_1008_12_39
Type: pfam
Location: 44261 - 44695 (+)
Type: pfam
Location: 44261 - 44695 (+)
Gene ID: HRGMv2_1008_12_40
Type: TC
Location: 44763 - 46097 (+)
Type: TC
Location: 44763 - 46097 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.