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Cluster: HRGMv2_1007_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1007_10 HRGMv2_1007_10_5 3818 4987 - CE9
STP HRGMv2_1007_10 HRGMv2_1007_10_6 5105 6271 - SIS | SIS
TF HRGMv2_1007_10 HRGMv2_1007_10_7 6386 7117 - GntR
TC HRGMv2_1007_10 HRGMv2_1007_10_8 7303 8385 - 4.A.6.1.4
TC HRGMv2_1007_10 HRGMv2_1007_10_9 8375 9175 - 4.A.6.1.4
TC HRGMv2_1007_10 HRGMv2_1007_10_10 9266 9748 - 4.A.6.1.4
pfam HRGMv2_1007_10 HRGMv2_1007_10_11 9785 10066 - YajC
TC HRGMv2_1007_10 HRGMv2_1007_10_12 10066 10509 - 4.A.6.1.16
Gene ID: HRGMv2_1007_10_5
Type: CAZyme
Location: 3818 - 4987 (-)
Gene ID: HRGMv2_1007_10_6
Type: STP
Location: 5105 - 6271 (-)
Gene ID: HRGMv2_1007_10_7
Type: TF
Location: 6386 - 7117 (-)
Gene ID: HRGMv2_1007_10_8
Type: TC
Location: 7303 - 8385 (-)
Gene ID: HRGMv2_1007_10_9
Type: TC
Location: 8375 - 9175 (-)
Gene ID: HRGMv2_1007_10_10
Type: TC
Location: 9266 - 9748 (-)
Gene ID: HRGMv2_1007_10_11
Type: pfam
Location: 9785 - 10066 (-)
Gene ID: HRGMv2_1007_10_12
Type: TC
Location: 10066 - 10509 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1007_10_11 vegan > omnivore 1.02991 0.00863

🧭 Explore Read Mapping of CGC

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