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Cluster: HRGMv2_1007_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1007_39 HRGMv2_1007_39_4 2278 3783 + GH77
CAZyme HRGMv2_1007_39 HRGMv2_1007_39_5 3912 6179 + GT35
TC HRGMv2_1007_39 HRGMv2_1007_39_6 6637 7836 - 3.A.1.1.22
TC HRGMv2_1007_39 HRGMv2_1007_39_7 7905 8744 - 3.A.1.1.45
TC HRGMv2_1007_39 HRGMv2_1007_39_8 8744 9598 - 3.A.1.1.45
TC HRGMv2_1007_39 HRGMv2_1007_39_9 9686 11002 - 3.A.1.1.45
TF HRGMv2_1007_39 HRGMv2_1007_39_10 11309 12028 - GntR
TC HRGMv2_1007_39 HRGMv2_1007_39_11 12291 14708 + 4.A.1.1.8
Gene ID: HRGMv2_1007_39_4
Type: CAZyme
Location: 2278 - 3783 (+)
Gene ID: HRGMv2_1007_39_5
Type: CAZyme
Location: 3912 - 6179 (+)
Gene ID: HRGMv2_1007_39_6
Type: TC
Location: 6637 - 7836 (-)
Gene ID: HRGMv2_1007_39_7
Type: TC
Location: 7905 - 8744 (-)
Gene ID: HRGMv2_1007_39_8
Type: TC
Location: 8744 - 9598 (-)
Gene ID: HRGMv2_1007_39_9
Type: TC
Location: 9686 - 11002 (-)
Gene ID: HRGMv2_1007_39_10
Type: TF
Location: 11309 - 12028 (-)
Gene ID: HRGMv2_1007_39_11
Type: TC
Location: 12291 - 14708 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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