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Cluster: HRGMv2_1007_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1007_24 HRGMv2_1007_24_6 5005 5343 - 4.A.3.1.2
TF HRGMv2_1007_24 HRGMv2_1007_24_7 5558 6562 - LacI
TC HRGMv2_1007_24 HRGMv2_1007_24_8 6920 8686 + 4.A.3.1.1
CAZyme HRGMv2_1007_24 HRGMv2_1007_24_9 8753 10192 + GH1
TF HRGMv2_1007_24 HRGMv2_1007_24_10 10470 11507 - LacI
CAZyme HRGMv2_1007_24 HRGMv2_1007_24_11 11849 13291 + GH1
TC HRGMv2_1007_24 HRGMv2_1007_24_12 13468 15228 + 4.A.3.1.1
TF HRGMv2_1007_24 HRGMv2_1007_24_13 15482 16492 - LacI
TC HRGMv2_1007_24 HRGMv2_1007_24_14 16768 18015 + 4.A.3.1.1
TC HRGMv2_1007_24 HRGMv2_1007_24_15 17961 18545 + 4.A.3.1.1
CAZyme HRGMv2_1007_24 HRGMv2_1007_24_16 18621 20042 + GH1
pfam HRGMv2_1007_24 HRGMv2_1007_24_17 20411 21643 + Fic
STP HRGMv2_1007_24 HRGMv2_1007_24_18 21692 22021 - DeoRC
TC HRGMv2_1007_24 HRGMv2_1007_24_19 22184 23878 - 4.A.3.1.1
Gene ID: HRGMv2_1007_24_6
Type: TC
Location: 5005 - 5343 (-)
Gene ID: HRGMv2_1007_24_7
Type: TF
Location: 5558 - 6562 (-)
Gene ID: HRGMv2_1007_24_8
Type: TC
Location: 6920 - 8686 (+)
Gene ID: HRGMv2_1007_24_9
Type: CAZyme
Location: 8753 - 10192 (+)
Gene ID: HRGMv2_1007_24_10
Type: TF
Location: 10470 - 11507 (-)
Gene ID: HRGMv2_1007_24_11
Type: CAZyme
Location: 11849 - 13291 (+)
Gene ID: HRGMv2_1007_24_12
Type: TC
Location: 13468 - 15228 (+)
Gene ID: HRGMv2_1007_24_13
Type: TF
Location: 15482 - 16492 (-)
Gene ID: HRGMv2_1007_24_14
Type: TC
Location: 16768 - 18015 (+)
Gene ID: HRGMv2_1007_24_15
Type: TC
Location: 17961 - 18545 (+)
Gene ID: HRGMv2_1007_24_16
Type: CAZyme
Location: 18621 - 20042 (+)
Gene ID: HRGMv2_1007_24_17
Type: pfam
Location: 20411 - 21643 (+)
Gene ID: HRGMv2_1007_24_18
Type: STP
Location: 21692 - 22021 (-)
Gene ID: HRGMv2_1007_24_19
Type: TC
Location: 22184 - 23878 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1007_24_10 vegetarian > omnivore 1.03533 0.02677

🧭 Explore Read Mapping of CGC

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