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Cluster: HRGMv2_1007_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1007_21 HRGMv2_1007_21_17 17439 18365 - CE7
TC HRGMv2_1007_21 HRGMv2_1007_21_18 18497 19324 - 3.A.1.5.27
TC HRGMv2_1007_21 HRGMv2_1007_21_19 19325 21340 - 3.A.1.5.25
TC HRGMv2_1007_21 HRGMv2_1007_21_20 21344 22300 - 3.A.1.5.38
TC HRGMv2_1007_21 HRGMv2_1007_21_21 22456 24069 - 3.A.1.5.27
pfam HRGMv2_1007_21 HRGMv2_1007_21_22 24435 26375 - GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_1007_21 HRGMv2_1007_21_23 26382 28064 - 2.A.66.4.4
pfam HRGMv2_1007_21 HRGMv2_1007_21_24 28068 28568 - tRNA_edit
pfam HRGMv2_1007_21 HRGMv2_1007_21_25 28702 31581 - UvrA_DNA-bind | UvrA_inter
TC HRGMv2_1007_21 HRGMv2_1007_21_26 31841 32671 + 3.A.1.132.3
Gene ID: HRGMv2_1007_21_17
Type: CAZyme
Location: 17439 - 18365 (-)
Gene ID: HRGMv2_1007_21_18
Type: TC
Location: 18497 - 19324 (-)
Gene ID: HRGMv2_1007_21_19
Type: TC
Location: 19325 - 21340 (-)
Gene ID: HRGMv2_1007_21_20
Type: TC
Location: 21344 - 22300 (-)
Gene ID: HRGMv2_1007_21_21
Type: TC
Location: 22456 - 24069 (-)
Gene ID: HRGMv2_1007_21_22
Type: pfam
Location: 24435 - 26375 (-)
Gene ID: HRGMv2_1007_21_23
Type: TC
Location: 26382 - 28064 (-)
Gene ID: HRGMv2_1007_21_24
Type: pfam
Location: 28068 - 28568 (-)
Gene ID: HRGMv2_1007_21_25
Type: pfam
Location: 28702 - 31581 (-)
Gene ID: HRGMv2_1007_21_26
Type: TC
Location: 31841 - 32671 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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