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Cluster: HRGMv2_1007_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1007_15 HRGMv2_1007_15_26 23606 24988 - GH4
TC HRGMv2_1007_15 HRGMv2_1007_15_27 24992 26608 - 4.A.1.1.3
pfam HRGMv2_1007_15 HRGMv2_1007_15_28 26708 27574 - PRD | PRD | CAT_RBD
TC HRGMv2_1007_15 HRGMv2_1007_15_29 27581 28093 - 4.A.1.2.5
STP HRGMv2_1007_15 HRGMv2_1007_15_30 28460 29221 - Fer4
TC HRGMv2_1007_15 HRGMv2_1007_15_31 29847 32096 - 1.I.1.1.3
STP HRGMv2_1007_15 HRGMv2_1007_15_32 32698 33579 + FHA
STP HRGMv2_1007_15 HRGMv2_1007_15_33 33751 35835 + Pkinase
TC HRGMv2_1007_15 HRGMv2_1007_15_34 36087 38426 + 3.A.3.5.15
Gene ID: HRGMv2_1007_15_26
Type: CAZyme
Location: 23606 - 24988 (-)
Gene ID: HRGMv2_1007_15_27
Type: TC
Location: 24992 - 26608 (-)
Gene ID: HRGMv2_1007_15_28
Type: pfam
Location: 26708 - 27574 (-)
Gene ID: HRGMv2_1007_15_29
Type: TC
Location: 27581 - 28093 (-)
Gene ID: HRGMv2_1007_15_30
Type: STP
Location: 28460 - 29221 (-)
Gene ID: HRGMv2_1007_15_31
Type: TC
Location: 29847 - 32096 (-)
Gene ID: HRGMv2_1007_15_32
Type: STP
Location: 32698 - 33579 (+)
Gene ID: HRGMv2_1007_15_33
Type: STP
Location: 33751 - 35835 (+)
Gene ID: HRGMv2_1007_15_34
Type: TC
Location: 36087 - 38426 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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