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Cluster: HRGMv2_1004_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1004_5 HRGMv2_1004_5_3 2287 3708 - GH1
TC HRGMv2_1004_5 HRGMv2_1004_5_4 3785 5563 - 4.A.3.1.1
TF HRGMv2_1004_5 HRGMv2_1004_5_5 5839 6849 + LacI
TC HRGMv2_1004_5 HRGMv2_1004_5_6 7183 8943 - 4.A.3.1.1
CAZyme HRGMv2_1004_5 HRGMv2_1004_5_7 9120 10562 - GH1
TF HRGMv2_1004_5 HRGMv2_1004_5_8 10904 11941 + LacI
CAZyme HRGMv2_1004_5 HRGMv2_1004_5_9 12218 13657 - GH1
TC HRGMv2_1004_5 HRGMv2_1004_5_10 13724 15490 - 4.A.3.1.1
TF HRGMv2_1004_5 HRGMv2_1004_5_11 15848 16852 + LacI
TC HRGMv2_1004_5 HRGMv2_1004_5_12 17067 17405 + 4.A.3.1.2
Gene ID: HRGMv2_1004_5_3
Type: CAZyme
Location: 2287 - 3708 (-)
Gene ID: HRGMv2_1004_5_4
Type: TC
Location: 3785 - 5563 (-)
Gene ID: HRGMv2_1004_5_5
Type: TF
Location: 5839 - 6849 (+)
Gene ID: HRGMv2_1004_5_6
Type: TC
Location: 7183 - 8943 (-)
Gene ID: HRGMv2_1004_5_7
Type: CAZyme
Location: 9120 - 10562 (-)
Gene ID: HRGMv2_1004_5_8
Type: TF
Location: 10904 - 11941 (+)
Gene ID: HRGMv2_1004_5_9
Type: CAZyme
Location: 12218 - 13657 (-)
Gene ID: HRGMv2_1004_5_10
Type: TC
Location: 13724 - 15490 (-)
Gene ID: HRGMv2_1004_5_11
Type: TF
Location: 15848 - 16852 (+)
Gene ID: HRGMv2_1004_5_12
Type: TC
Location: 17067 - 17405 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1004_5_8 vegetarian > omnivore 1.04655 0.03181

🧭 Explore Read Mapping of CGC

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