Cluster: HRGMv2_1004_CGC3
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1004
- CGC Family ID: CGCFAM_00182
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1004_1 | HRGMv2_1004_1_220 | 215655 | 217097 | + | 3.A.1.8.1 |
| TC | HRGMv2_1004_1 | HRGMv2_1004_1_221 | 217101 | 218171 | + | 3.A.1.1.3 |
| NULL(UNKNOWN) | HRGMv2_1004_1 | HRGMv2_1004_1_222 | 218601 | 218759 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1004_1 | HRGMv2_1004_1_223 | 218770 | 220035 | + | 3.A.1.5.11 |
| NULL(UNKNOWN) | HRGMv2_1004_1 | HRGMv2_1004_1_224 | 220051 | 220380 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1004_1 | HRGMv2_1004_1_225 | 220469 | 221422 | + | 3.A.1.5.39 |
| TC | HRGMv2_1004_1 | HRGMv2_1004_1_226 | 221419 | 222249 | + | 3.A.1.5.39 |
| TC | HRGMv2_1004_1 | HRGMv2_1004_1_227 | 222253 | 223248 | + | 3.A.1.5.37 |
| TC | HRGMv2_1004_1 | HRGMv2_1004_1_228 | 223238 | 224023 | + | 3.A.1.5.36 |
| pfam | HRGMv2_1004_1 | HRGMv2_1004_1_229 | 224100 | 225263 | + | HGD-D |
| pfam | HRGMv2_1004_1 | HRGMv2_1004_1_230 | 225418 | 226182 | + | BcrAD_BadFG |
| CAZyme | HRGMv2_1004_1 | HRGMv2_1004_1_231 | 226197 | 227414 | + | GT4 |
Gene ID: HRGMv2_1004_1_220
Type: TC
Location: 215655 - 217097 (+)
Type: TC
Location: 215655 - 217097 (+)
Gene ID: HRGMv2_1004_1_221
Type: TC
Location: 217101 - 218171 (+)
Type: TC
Location: 217101 - 218171 (+)
Gene ID: HRGMv2_1004_1_222
Type:
Location: 218601 - 218759 (+)
Type:
Location: 218601 - 218759 (+)
Gene ID: HRGMv2_1004_1_223
Type: TC
Location: 218770 - 220035 (+)
Type: TC
Location: 218770 - 220035 (+)
Gene ID: HRGMv2_1004_1_224
Type:
Location: 220051 - 220380 (+)
Type:
Location: 220051 - 220380 (+)
Gene ID: HRGMv2_1004_1_225
Type: TC
Location: 220469 - 221422 (+)
Type: TC
Location: 220469 - 221422 (+)
Gene ID: HRGMv2_1004_1_226
Type: TC
Location: 221419 - 222249 (+)
Type: TC
Location: 221419 - 222249 (+)
Gene ID: HRGMv2_1004_1_227
Type: TC
Location: 222253 - 223248 (+)
Type: TC
Location: 222253 - 223248 (+)
Gene ID: HRGMv2_1004_1_228
Type: TC
Location: 223238 - 224023 (+)
Type: TC
Location: 223238 - 224023 (+)
Gene ID: HRGMv2_1004_1_229
Type: pfam
Location: 224100 - 225263 (+)
Type: pfam
Location: 224100 - 225263 (+)
Gene ID: HRGMv2_1004_1_230
Type: pfam
Location: 225418 - 226182 (+)
Type: pfam
Location: 225418 - 226182 (+)
Gene ID: HRGMv2_1004_1_231
Type: CAZyme
Location: 226197 - 227414 (+)
Type: CAZyme
Location: 226197 - 227414 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp958432255
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1004_1_223 | vegan > omnivore | 3.10730 | 0.00701 |
| HRGMv2_1004_1_224 | vegan > omnivore | 3.18530 | 0.00701 |
| HRGMv2_1004_1_225 | vegan > omnivore | 2.66185 | 0.00701 |
| HRGMv2_1004_1_225 | vegetarian > omnivore | 1.07902 | 0.04857 |
| HRGMv2_1004_1_226 | vegan > omnivore | 2.91036 | 0.00701 |
| HRGMv2_1004_1_226 | vegetarian > omnivore | 1.17396 | 0.04857 |
| HRGMv2_1004_1_228 | vegan > omnivore | 2.78479 | 0.00701 |
| HRGMv2_1004_1_231 | vegan > omnivore | 1.67394 | 0.00701 |