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Cluster: HRGMv2_1004_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1004_24 HRGMv2_1004_24_16 19040 20416 - GH13_20
TC HRGMv2_1004_24 HRGMv2_1004_24_17 20570 21766 - 2.A.1.2.18
NULL(UNKNOWN) HRGMv2_1004_24 HRGMv2_1004_24_18 21942 22694 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1004_24 HRGMv2_1004_24_19 22860 24233 - GH4
TF HRGMv2_1004_24 HRGMv2_1004_24_20 24409 25161 + HTH_6
TC HRGMv2_1004_24 HRGMv2_1004_24_21 25224 26888 - 4.A.1.1.3
TC HRGMv2_1004_24 HRGMv2_1004_24_22 27203 29563 - 9.A.8.1.6
Gene ID: HRGMv2_1004_24_16
Type: CAZyme
Location: 19040 - 20416 (-)
Gene ID: HRGMv2_1004_24_17
Type: TC
Location: 20570 - 21766 (-)
Gene ID: HRGMv2_1004_24_18
Type:
Location: 21942 - 22694 (-)
Gene ID: HRGMv2_1004_24_19
Type: CAZyme
Location: 22860 - 24233 (-)
Gene ID: HRGMv2_1004_24_20
Type: TF
Location: 24409 - 25161 (+)
Gene ID: HRGMv2_1004_24_21
Type: TC
Location: 25224 - 26888 (-)
Gene ID: HRGMv2_1004_24_22
Type: TC
Location: 27203 - 29563 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1004_24_18 vegan > omnivore 1.66720 0.00701
HRGMv2_1004_24_19 vegan > omnivore 1.52328 0.00701

🧭 Explore Read Mapping of CGC

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