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Cluster: HRGMv2_1003_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1003_11 HRGMv2_1003_11_18 18406 19113 + 1.C.82.1.1
pfam HRGMv2_1003_11 HRGMv2_1003_11_19 19237 19947 - Metallophos | Metallophos_2
pfam HRGMv2_1003_11 HRGMv2_1003_11_20 19944 21860 - Bmp
TC HRGMv2_1003_11 HRGMv2_1003_11_21 21955 22722 - 1.A.23.4.10
pfam HRGMv2_1003_11 HRGMv2_1003_11_22 22851 24878 - Metallophos | 5_nucleotid_C
TC HRGMv2_1003_11 HRGMv2_1003_11_23 25036 25830 - 3.A.1.34.1
TC HRGMv2_1003_11 HRGMv2_1003_11_24 25823 26746 - 3.A.1.34.1
TC HRGMv2_1003_11 HRGMv2_1003_11_25 26951 27931 - 3.A.1.34.1
NULL(UNKNOWN) HRGMv2_1003_11 HRGMv2_1003_11_26 28092 28874 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1003_11 HRGMv2_1003_11_27 29133 30536 - tRNA-synt_2 | tRNA_anti-codon
TC HRGMv2_1003_11 HRGMv2_1003_11_28 30718 31281 - 4.A.1.2.6
peptidase HRGMv2_1003_11 HRGMv2_1003_11_29 31525 32424 + S09.UPW
NULL(UNKNOWN) HRGMv2_1003_11 HRGMv2_1003_11_30 32472 32792 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1003_11 HRGMv2_1003_11_31 32914 35274 + 9.A.8.1.6
TC HRGMv2_1003_11 HRGMv2_1003_11_32 35397 36593 + 2.A.1.2.18
CAZyme HRGMv2_1003_11 HRGMv2_1003_11_33 36747 38123 + GH13_20
Gene ID: HRGMv2_1003_11_18
Type: TC
Location: 18406 - 19113 (+)
Gene ID: HRGMv2_1003_11_19
Type: pfam
Location: 19237 - 19947 (-)
Gene ID: HRGMv2_1003_11_20
Type: pfam
Location: 19944 - 21860 (-)
Gene ID: HRGMv2_1003_11_21
Type: TC
Location: 21955 - 22722 (-)
Gene ID: HRGMv2_1003_11_22
Type: pfam
Location: 22851 - 24878 (-)
Gene ID: HRGMv2_1003_11_23
Type: TC
Location: 25036 - 25830 (-)
Gene ID: HRGMv2_1003_11_24
Type: TC
Location: 25823 - 26746 (-)
Gene ID: HRGMv2_1003_11_25
Type: TC
Location: 26951 - 27931 (-)
Gene ID: HRGMv2_1003_11_26
Type:
Location: 28092 - 28874 (-)
Gene ID: HRGMv2_1003_11_27
Type: pfam
Location: 29133 - 30536 (-)
Gene ID: HRGMv2_1003_11_28
Type: TC
Location: 30718 - 31281 (-)
Gene ID: HRGMv2_1003_11_29
Type: peptidase
Location: 31525 - 32424 (+)
Gene ID: HRGMv2_1003_11_30
Type:
Location: 32472 - 32792 (+)
Gene ID: HRGMv2_1003_11_31
Type: TC
Location: 32914 - 35274 (+)
Gene ID: HRGMv2_1003_11_32
Type: TC
Location: 35397 - 36593 (+)
Gene ID: HRGMv2_1003_11_33
Type: CAZyme
Location: 36747 - 38123 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1003_11_22 vegan > omnivore 1.86828 0.00863
HRGMv2_1003_11_22 vegetarian > omnivore 1.35292 0.01287

🧭 Explore Read Mapping of CGC

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