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Cluster: HRGMv2_1003_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1003_1 HRGMv2_1003_1_40 37568 38737 - CE9
STP HRGMv2_1003_1 HRGMv2_1003_1_41 38856 40022 - SIS | SIS
TF HRGMv2_1003_1 HRGMv2_1003_1_42 40137 40868 - GntR
TC HRGMv2_1003_1 HRGMv2_1003_1_43 41053 42135 - 4.A.6.1.4
TC HRGMv2_1003_1 HRGMv2_1003_1_44 42125 42925 - 4.A.6.1.4
TC HRGMv2_1003_1 HRGMv2_1003_1_45 43016 43498 - 4.A.6.1.4
pfam HRGMv2_1003_1 HRGMv2_1003_1_46 43535 43816 - YajC
TC HRGMv2_1003_1 HRGMv2_1003_1_47 43816 44259 - 4.A.6.1.16
Gene ID: HRGMv2_1003_1_40
Type: CAZyme
Location: 37568 - 38737 (-)
Gene ID: HRGMv2_1003_1_41
Type: STP
Location: 38856 - 40022 (-)
Gene ID: HRGMv2_1003_1_42
Type: TF
Location: 40137 - 40868 (-)
Gene ID: HRGMv2_1003_1_43
Type: TC
Location: 41053 - 42135 (-)
Gene ID: HRGMv2_1003_1_44
Type: TC
Location: 42125 - 42925 (-)
Gene ID: HRGMv2_1003_1_45
Type: TC
Location: 43016 - 43498 (-)
Gene ID: HRGMv2_1003_1_46
Type: pfam
Location: 43535 - 43816 (-)
Gene ID: HRGMv2_1003_1_47
Type: TC
Location: 43816 - 44259 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1003_1_46 vegan > omnivore 1.02770 0.00863

🧭 Explore Read Mapping of CGC

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