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Cluster: HRGMv2_1002_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1002_29 HRGMv2_1002_29_1 205 543 - 4.A.3.1.2
TF HRGMv2_1002_29 HRGMv2_1002_29_2 758 1792 - LacI
TC HRGMv2_1002_29 HRGMv2_1002_29_3 2120 3895 + 4.A.3.1.1
CAZyme HRGMv2_1002_29 HRGMv2_1002_29_4 3962 5401 + GH1
TF HRGMv2_1002_29 HRGMv2_1002_29_5 5669 6706 - LacI
CAZyme HRGMv2_1002_29 HRGMv2_1002_29_6 7048 8490 + GH1
TC HRGMv2_1002_29 HRGMv2_1002_29_7 8667 10427 + 4.A.3.1.1
TF HRGMv2_1002_29 HRGMv2_1002_29_8 10765 11775 - LacI
TC HRGMv2_1002_29 HRGMv2_1002_29_9 12051 13829 + 4.A.3.1.1
CAZyme HRGMv2_1002_29 HRGMv2_1002_29_10 13905 15326 + GH1
pfam HRGMv2_1002_29 HRGMv2_1002_29_11 15694 16926 + Fic
STP HRGMv2_1002_29 HRGMv2_1002_29_12 16980 17303 - DeoRC
TC HRGMv2_1002_29 HRGMv2_1002_29_13 17466 19160 - 4.A.3.1.1
Gene ID: HRGMv2_1002_29_1
Type: TC
Location: 205 - 543 (-)
Gene ID: HRGMv2_1002_29_2
Type: TF
Location: 758 - 1792 (-)
Gene ID: HRGMv2_1002_29_3
Type: TC
Location: 2120 - 3895 (+)
Gene ID: HRGMv2_1002_29_4
Type: CAZyme
Location: 3962 - 5401 (+)
Gene ID: HRGMv2_1002_29_5
Type: TF
Location: 5669 - 6706 (-)
Gene ID: HRGMv2_1002_29_6
Type: CAZyme
Location: 7048 - 8490 (+)
Gene ID: HRGMv2_1002_29_7
Type: TC
Location: 8667 - 10427 (+)
Gene ID: HRGMv2_1002_29_8
Type: TF
Location: 10765 - 11775 (-)
Gene ID: HRGMv2_1002_29_9
Type: TC
Location: 12051 - 13829 (+)
Gene ID: HRGMv2_1002_29_10
Type: CAZyme
Location: 13905 - 15326 (+)
Gene ID: HRGMv2_1002_29_11
Type: pfam
Location: 15694 - 16926 (+)
Gene ID: HRGMv2_1002_29_12
Type: STP
Location: 16980 - 17303 (-)
Gene ID: HRGMv2_1002_29_13
Type: TC
Location: 17466 - 19160 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1002_29_5 vegetarian > omnivore 1.07283 0.02242

🧭 Explore Read Mapping of CGC

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