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Cluster: HRGMv2_1002_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1002_73 HRGMv2_1002_73_1 303 746 + 4.A.6.1.16
pfam HRGMv2_1002_73 HRGMv2_1002_73_2 746 1027 + YajC
TC HRGMv2_1002_73 HRGMv2_1002_73_3 1064 1546 + 4.A.6.1.4
TC HRGMv2_1002_73 HRGMv2_1002_73_4 1637 2437 + 4.A.6.1.4
TC HRGMv2_1002_73 HRGMv2_1002_73_5 2427 3509 + 4.A.6.1.4
TF HRGMv2_1002_73 HRGMv2_1002_73_6 3694 4425 + GntR
STP HRGMv2_1002_73 HRGMv2_1002_73_7 4540 5706 + SIS | SIS
CAZyme HRGMv2_1002_73 HRGMv2_1002_73_8 5824 6993 + CE9
Gene ID: HRGMv2_1002_73_1
Type: TC
Location: 303 - 746 (+)
Gene ID: HRGMv2_1002_73_2
Type: pfam
Location: 746 - 1027 (+)
Gene ID: HRGMv2_1002_73_3
Type: TC
Location: 1064 - 1546 (+)
Gene ID: HRGMv2_1002_73_4
Type: TC
Location: 1637 - 2437 (+)
Gene ID: HRGMv2_1002_73_5
Type: TC
Location: 2427 - 3509 (+)
Gene ID: HRGMv2_1002_73_6
Type: TF
Location: 3694 - 4425 (+)
Gene ID: HRGMv2_1002_73_7
Type: STP
Location: 4540 - 5706 (+)
Gene ID: HRGMv2_1002_73_8
Type: CAZyme
Location: 5824 - 6993 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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