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Cluster: HRGMv2_1001_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1001_39 HRGMv2_1001_39_7 4979 5905 - CE7
TC HRGMv2_1001_39 HRGMv2_1001_39_8 6037 6864 - 3.A.1.5.27
TC HRGMv2_1001_39 HRGMv2_1001_39_9 6865 8880 - 3.A.1.5.25
TC HRGMv2_1001_39 HRGMv2_1001_39_10 8884 9840 - 3.A.1.5.38
TC HRGMv2_1001_39 HRGMv2_1001_39_11 9998 11611 - 3.A.1.5.27
pfam HRGMv2_1001_39 HRGMv2_1001_39_12 11976 13916 - GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_1001_39 HRGMv2_1001_39_13 13923 15605 - 2.A.66.4.4
Gene ID: HRGMv2_1001_39_7
Type: CAZyme
Location: 4979 - 5905 (-)
Gene ID: HRGMv2_1001_39_8
Type: TC
Location: 6037 - 6864 (-)
Gene ID: HRGMv2_1001_39_9
Type: TC
Location: 6865 - 8880 (-)
Gene ID: HRGMv2_1001_39_10
Type: TC
Location: 8884 - 9840 (-)
Gene ID: HRGMv2_1001_39_11
Type: TC
Location: 9998 - 11611 (-)
Gene ID: HRGMv2_1001_39_12
Type: pfam
Location: 11976 - 13916 (-)
Gene ID: HRGMv2_1001_39_13
Type: TC
Location: 13923 - 15605 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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