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Cluster: HRGMv2_1001_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1001_30 HRGMv2_1001_30_9 6651 7820 - CE9
STP HRGMv2_1001_30 HRGMv2_1001_30_10 7938 9104 - SIS | SIS
TF HRGMv2_1001_30 HRGMv2_1001_30_11 9219 9950 - GntR
TC HRGMv2_1001_30 HRGMv2_1001_30_12 10136 11218 - 4.A.6.1.4
TC HRGMv2_1001_30 HRGMv2_1001_30_13 11208 12008 - 4.A.6.1.4
TC HRGMv2_1001_30 HRGMv2_1001_30_14 12099 12581 - 4.A.6.1.4
pfam HRGMv2_1001_30 HRGMv2_1001_30_15 12618 12899 - YajC
TC HRGMv2_1001_30 HRGMv2_1001_30_16 12899 13342 - 4.A.6.1.16
Gene ID: HRGMv2_1001_30_9
Type: CAZyme
Location: 6651 - 7820 (-)
Gene ID: HRGMv2_1001_30_10
Type: STP
Location: 7938 - 9104 (-)
Gene ID: HRGMv2_1001_30_11
Type: TF
Location: 9219 - 9950 (-)
Gene ID: HRGMv2_1001_30_12
Type: TC
Location: 10136 - 11218 (-)
Gene ID: HRGMv2_1001_30_13
Type: TC
Location: 11208 - 12008 (-)
Gene ID: HRGMv2_1001_30_14
Type: TC
Location: 12099 - 12581 (-)
Gene ID: HRGMv2_1001_30_15
Type: pfam
Location: 12618 - 12899 (-)
Gene ID: HRGMv2_1001_30_16
Type: TC
Location: 12899 - 13342 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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