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Cluster: HRGMv2_1001_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1001_28 HRGMv2_1001_28_6 4080 5456 - GH13_20
TC HRGMv2_1001_28 HRGMv2_1001_28_7 5610 6806 - 2.A.1.2.18
TC HRGMv2_1001_28 HRGMv2_1001_28_8 6928 9288 - 9.A.8.1.6
peptidase HRGMv2_1001_28 HRGMv2_1001_28_9 9761 10660 - S09.UPW
TC HRGMv2_1001_28 HRGMv2_1001_28_10 10904 11467 + 4.A.1.2.6
pfam HRGMv2_1001_28 HRGMv2_1001_28_11 11649 13052 + tRNA-synt_2 | tRNA_anti-codon
NULL(UNKNOWN) HRGMv2_1001_28 HRGMv2_1001_28_12 13311 14099 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1001_28 HRGMv2_1001_28_13 14259 15239 + 3.A.1.34.1
TC HRGMv2_1001_28 HRGMv2_1001_28_14 15443 16366 + 3.A.1.34.1
TC HRGMv2_1001_28 HRGMv2_1001_28_15 16359 17153 + 3.A.1.34.1
pfam HRGMv2_1001_28 HRGMv2_1001_28_16 17311 19335 + Metallophos | 5_nucleotid_C
TC HRGMv2_1001_28 HRGMv2_1001_28_17 19464 20231 + 1.A.23.4.2
Gene ID: HRGMv2_1001_28_6
Type: CAZyme
Location: 4080 - 5456 (-)
Gene ID: HRGMv2_1001_28_7
Type: TC
Location: 5610 - 6806 (-)
Gene ID: HRGMv2_1001_28_8
Type: TC
Location: 6928 - 9288 (-)
Gene ID: HRGMv2_1001_28_9
Type: peptidase
Location: 9761 - 10660 (-)
Gene ID: HRGMv2_1001_28_10
Type: TC
Location: 10904 - 11467 (+)
Gene ID: HRGMv2_1001_28_11
Type: pfam
Location: 11649 - 13052 (+)
Gene ID: HRGMv2_1001_28_12
Type:
Location: 13311 - 14099 (+)
Gene ID: HRGMv2_1001_28_13
Type: TC
Location: 14259 - 15239 (+)
Gene ID: HRGMv2_1001_28_14
Type: TC
Location: 15443 - 16366 (+)
Gene ID: HRGMv2_1001_28_15
Type: TC
Location: 16359 - 17153 (+)
Gene ID: HRGMv2_1001_28_16
Type: pfam
Location: 17311 - 19335 (+)
Gene ID: HRGMv2_1001_28_17
Type: TC
Location: 19464 - 20231 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1001_28_16 vegan > omnivore 1.76360 0.01287
HRGMv2_1001_28_16 vegetarian > omnivore 1.34641 0.02258

🧭 Explore Read Mapping of CGC

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