Cluster: HRGMv2_1001_CGC12
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1001
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1001_26 | HRGMv2_1001_26_19 | 20651 | 20989 | - | 4.A.3.1.2 |
| TF | HRGMv2_1001_26 | HRGMv2_1001_26_20 | 21203 | 22207 | - | LacI |
| TC | HRGMv2_1001_26 | HRGMv2_1001_26_21 | 22565 | 24340 | + | 4.A.3.1.1 |
| CAZyme | HRGMv2_1001_26 | HRGMv2_1001_26_22 | 24407 | 25846 | + | GH1 |
| TF | HRGMv2_1001_26 | HRGMv2_1001_26_23 | 26109 | 27146 | - | LacI |
| CAZyme | HRGMv2_1001_26 | HRGMv2_1001_26_24 | 27488 | 28930 | + | GH1 |
| TC | HRGMv2_1001_26 | HRGMv2_1001_26_25 | 29107 | 30858 | + | 4.A.3.1.1 |
Gene ID: HRGMv2_1001_26_19
Type: TC
Location: 20651 - 20989 (-)
Type: TC
Location: 20651 - 20989 (-)
Gene ID: HRGMv2_1001_26_20
Type: TF
Location: 21203 - 22207 (-)
Type: TF
Location: 21203 - 22207 (-)
Gene ID: HRGMv2_1001_26_21
Type: TC
Location: 22565 - 24340 (+)
Type: TC
Location: 22565 - 24340 (+)
Gene ID: HRGMv2_1001_26_22
Type: CAZyme
Location: 24407 - 25846 (+)
Type: CAZyme
Location: 24407 - 25846 (+)
Gene ID: HRGMv2_1001_26_23
Type: TF
Location: 26109 - 27146 (-)
Type: TF
Location: 26109 - 27146 (-)
Gene ID: HRGMv2_1001_26_24
Type: CAZyme
Location: 27488 - 28930 (+)
Type: CAZyme
Location: 27488 - 28930 (+)
Gene ID: HRGMv2_1001_26_25
Type: TC
Location: 29107 - 30858 (+)
Type: TC
Location: 29107 - 30858 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.