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Cluster: HRGMv2_1001_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1001_25 HRGMv2_1001_25_11 15129 17579 - 4.A.1.1.8
TF HRGMv2_1001_25 HRGMv2_1001_25_12 17809 18528 + GntR
TC HRGMv2_1001_25 HRGMv2_1001_25_13 18835 20151 + 3.A.1.1.45
TC HRGMv2_1001_25 HRGMv2_1001_25_14 20239 21093 + 3.A.1.1.45
TC HRGMv2_1001_25 HRGMv2_1001_25_15 21093 21932 + 3.A.1.1.45
TC HRGMv2_1001_25 HRGMv2_1001_25_16 22001 23200 + 3.A.1.1.22
CAZyme HRGMv2_1001_25 HRGMv2_1001_25_17 23659 25926 - GT35
CAZyme HRGMv2_1001_25 HRGMv2_1001_25_18 26055 27560 - GH77
Gene ID: HRGMv2_1001_25_11
Type: TC
Location: 15129 - 17579 (-)
Gene ID: HRGMv2_1001_25_12
Type: TF
Location: 17809 - 18528 (+)
Gene ID: HRGMv2_1001_25_13
Type: TC
Location: 18835 - 20151 (+)
Gene ID: HRGMv2_1001_25_14
Type: TC
Location: 20239 - 21093 (+)
Gene ID: HRGMv2_1001_25_15
Type: TC
Location: 21093 - 21932 (+)
Gene ID: HRGMv2_1001_25_16
Type: TC
Location: 22001 - 23200 (+)
Gene ID: HRGMv2_1001_25_17
Type: CAZyme
Location: 23659 - 25926 (-)
Gene ID: HRGMv2_1001_25_18
Type: CAZyme
Location: 26055 - 27560 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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