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Cluster: HRGMv2_1000_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1000_6 HRGMv2_1000_6_27 33746 34540 - 3.A.1.34.1
TC HRGMv2_1000_6 HRGMv2_1000_6_28 34533 35456 - 3.A.1.34.1
TC HRGMv2_1000_6 HRGMv2_1000_6_29 35660 36640 - 3.A.1.34.1
NULL(UNKNOWN) HRGMv2_1000_6 HRGMv2_1000_6_30 36801 37586 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1000_6 HRGMv2_1000_6_31 37845 39248 - tRNA-synt_2 | tRNA_anti-codon
TC HRGMv2_1000_6 HRGMv2_1000_6_32 39429 39992 - 4.A.1.2.6
peptidase HRGMv2_1000_6 HRGMv2_1000_6_33 40236 41138 + S09.UPW
pfam HRGMv2_1000_6 HRGMv2_1000_6_34 41561 42682 - DEDD_Tnp_IS110 | Transposase_20
TC HRGMv2_1000_6 HRGMv2_1000_6_35 43004 45364 + 9.A.8.1.6
TC HRGMv2_1000_6 HRGMv2_1000_6_36 45485 46681 + 2.A.1.2.18
CAZyme HRGMv2_1000_6 HRGMv2_1000_6_37 46835 48211 + GH13_20
Gene ID: HRGMv2_1000_6_27
Type: TC
Location: 33746 - 34540 (-)
Gene ID: HRGMv2_1000_6_28
Type: TC
Location: 34533 - 35456 (-)
Gene ID: HRGMv2_1000_6_29
Type: TC
Location: 35660 - 36640 (-)
Gene ID: HRGMv2_1000_6_30
Type:
Location: 36801 - 37586 (-)
Gene ID: HRGMv2_1000_6_31
Type: pfam
Location: 37845 - 39248 (-)
Gene ID: HRGMv2_1000_6_32
Type: TC
Location: 39429 - 39992 (-)
Gene ID: HRGMv2_1000_6_33
Type: peptidase
Location: 40236 - 41138 (+)
Gene ID: HRGMv2_1000_6_34
Type: pfam
Location: 41561 - 42682 (-)
Gene ID: HRGMv2_1000_6_35
Type: TC
Location: 43004 - 45364 (+)
Gene ID: HRGMv2_1000_6_36
Type: TC
Location: 45485 - 46681 (+)
Gene ID: HRGMv2_1000_6_37
Type: CAZyme
Location: 46835 - 48211 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1000_6_34 vegan > omnivore 1.80900 0.00863

🧭 Explore Read Mapping of CGC

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