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Cluster: HRGMv2_1000_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1000_3 HRGMv2_1000_3_95 96015 97436 - GH1
TC HRGMv2_1000_3 HRGMv2_1000_3_96 97512 99290 - 4.A.3.1.1
TF HRGMv2_1000_3 HRGMv2_1000_3_97 99575 100576 + LacI
TC HRGMv2_1000_3 HRGMv2_1000_3_98 100834 102594 - 4.A.3.1.1
CAZyme HRGMv2_1000_3 HRGMv2_1000_3_99 102771 104213 - GH1
TF HRGMv2_1000_3 HRGMv2_1000_3_100 104555 105592 + LacI
CAZyme HRGMv2_1000_3 HRGMv2_1000_3_101 105871 107310 - GH1
TC HRGMv2_1000_3 HRGMv2_1000_3_102 107377 109152 - 4.A.3.1.1
TF HRGMv2_1000_3 HRGMv2_1000_3_103 109510 110514 + LacI
TC HRGMv2_1000_3 HRGMv2_1000_3_104 110729 111067 + 4.A.3.1.2
Gene ID: HRGMv2_1000_3_95
Type: CAZyme
Location: 96015 - 97436 (-)
Gene ID: HRGMv2_1000_3_96
Type: TC
Location: 97512 - 99290 (-)
Gene ID: HRGMv2_1000_3_97
Type: TF
Location: 99575 - 100576 (+)
Gene ID: HRGMv2_1000_3_98
Type: TC
Location: 100834 - 102594 (-)
Gene ID: HRGMv2_1000_3_99
Type: CAZyme
Location: 102771 - 104213 (-)
Gene ID: HRGMv2_1000_3_100
Type: TF
Location: 104555 - 105592 (+)
Gene ID: HRGMv2_1000_3_101
Type: CAZyme
Location: 105871 - 107310 (-)
Gene ID: HRGMv2_1000_3_102
Type: TC
Location: 107377 - 109152 (-)
Gene ID: HRGMv2_1000_3_103
Type: TF
Location: 109510 - 110514 (+)
Gene ID: HRGMv2_1000_3_104
Type: TC
Location: 110729 - 111067 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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