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Cluster: HRGMv2_1000_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1000_3 HRGMv2_1000_3_79 80449 80892 + 4.A.6.1.16
pfam HRGMv2_1000_3 HRGMv2_1000_3_80 80892 81173 + YajC
TC HRGMv2_1000_3 HRGMv2_1000_3_81 81210 81692 + 4.A.6.1.4
TC HRGMv2_1000_3 HRGMv2_1000_3_82 81783 82583 + 4.A.6.1.4
TC HRGMv2_1000_3 HRGMv2_1000_3_83 82573 83655 + 4.A.6.1.4
TF HRGMv2_1000_3 HRGMv2_1000_3_84 83841 84572 + GntR
STP HRGMv2_1000_3 HRGMv2_1000_3_85 84687 85853 + SIS | SIS
CAZyme HRGMv2_1000_3 HRGMv2_1000_3_86 85972 87141 + CE9
Gene ID: HRGMv2_1000_3_79
Type: TC
Location: 80449 - 80892 (+)
Gene ID: HRGMv2_1000_3_80
Type: pfam
Location: 80892 - 81173 (+)
Gene ID: HRGMv2_1000_3_81
Type: TC
Location: 81210 - 81692 (+)
Gene ID: HRGMv2_1000_3_82
Type: TC
Location: 81783 - 82583 (+)
Gene ID: HRGMv2_1000_3_83
Type: TC
Location: 82573 - 83655 (+)
Gene ID: HRGMv2_1000_3_84
Type: TF
Location: 83841 - 84572 (+)
Gene ID: HRGMv2_1000_3_85
Type: STP
Location: 84687 - 85853 (+)
Gene ID: HRGMv2_1000_3_86
Type: CAZyme
Location: 85972 - 87141 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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