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Cluster: HRGMv2_0996_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0996_17 HRGMv2_0996_17_12 16014 18464 - 4.A.1.1.8
NULL(UNKNOWN) HRGMv2_0996_17 HRGMv2_0996_17_13 18486 18602 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_0996_17 HRGMv2_0996_17_14 18689 19408 + GntR
TC HRGMv2_0996_17 HRGMv2_0996_17_15 19715 21031 + 3.A.1.1.45
TC HRGMv2_0996_17 HRGMv2_0996_17_16 21119 21973 + 3.A.1.1.45
TC HRGMv2_0996_17 HRGMv2_0996_17_17 21973 22812 + 3.A.1.1.45
TC HRGMv2_0996_17 HRGMv2_0996_17_18 22881 24080 + 3.A.1.1.22
CAZyme HRGMv2_0996_17 HRGMv2_0996_17_19 24537 26804 - GT35
CAZyme HRGMv2_0996_17 HRGMv2_0996_17_20 26933 28438 - GH77
Gene ID: HRGMv2_0996_17_12
Type: TC
Location: 16014 - 18464 (-)
Gene ID: HRGMv2_0996_17_13
Type:
Location: 18486 - 18602 (+)
Gene ID: HRGMv2_0996_17_14
Type: TF
Location: 18689 - 19408 (+)
Gene ID: HRGMv2_0996_17_15
Type: TC
Location: 19715 - 21031 (+)
Gene ID: HRGMv2_0996_17_16
Type: TC
Location: 21119 - 21973 (+)
Gene ID: HRGMv2_0996_17_17
Type: TC
Location: 21973 - 22812 (+)
Gene ID: HRGMv2_0996_17_18
Type: TC
Location: 22881 - 24080 (+)
Gene ID: HRGMv2_0996_17_19
Type: CAZyme
Location: 24537 - 26804 (-)
Gene ID: HRGMv2_0996_17_20
Type: CAZyme
Location: 26933 - 28438 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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