Cluster: HRGMv2_0996_CGC13
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0996
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0996_11 | HRGMv2_0996_11_66 | 70854 | 72275 | - | GH1 |
| TC | HRGMv2_0996_11 | HRGMv2_0996_11_67 | 72351 | 74108 | - | 4.A.3.1.1 |
| TF | HRGMv2_0996_11 | HRGMv2_0996_11_68 | 74384 | 75394 | + | LacI |
| CAZyme | HRGMv2_0996_11 | HRGMv2_0996_11_69 | 75594 | 77033 | - | GH1 |
| TC | HRGMv2_0996_11 | HRGMv2_0996_11_70 | 77100 | 78866 | - | 4.A.3.1.1 |
| TF | HRGMv2_0996_11 | HRGMv2_0996_11_71 | 79225 | 80229 | + | LacI |
| TC | HRGMv2_0996_11 | HRGMv2_0996_11_72 | 80444 | 80782 | + | 4.A.3.1.2 |
Gene ID: HRGMv2_0996_11_66
Type: CAZyme
Location: 70854 - 72275 (-)
Type: CAZyme
Location: 70854 - 72275 (-)
Gene ID: HRGMv2_0996_11_67
Type: TC
Location: 72351 - 74108 (-)
Type: TC
Location: 72351 - 74108 (-)
Gene ID: HRGMv2_0996_11_68
Type: TF
Location: 74384 - 75394 (+)
Type: TF
Location: 74384 - 75394 (+)
Gene ID: HRGMv2_0996_11_69
Type: CAZyme
Location: 75594 - 77033 (-)
Type: CAZyme
Location: 75594 - 77033 (-)
Gene ID: HRGMv2_0996_11_70
Type: TC
Location: 77100 - 78866 (-)
Type: TC
Location: 77100 - 78866 (-)
Gene ID: HRGMv2_0996_11_71
Type: TF
Location: 79225 - 80229 (+)
Type: TF
Location: 79225 - 80229 (+)
Gene ID: HRGMv2_0996_11_72
Type: TC
Location: 80444 - 80782 (+)
Type: TC
Location: 80444 - 80782 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.