Cluster: HRGMv2_0996_CGC12
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0996
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0996_11 | HRGMv2_0996_11_44 | 48707 | 50194 | + | 4.A.1.1.7 |
| TF | HRGMv2_0996_11 | HRGMv2_0996_11_45 | 50427 | 51158 | + | GntR |
| CAZyme | HRGMv2_0996_11 | HRGMv2_0996_11_46 | 51302 | 52471 | + | CE9 |
| pfam | HRGMv2_0996_11 | HRGMv2_0996_11_47 | 52504 | 52977 | + | DUF386 |
| CAZyme | HRGMv2_0996_11 | HRGMv2_0996_11_48 | 53463 | 55259 | + | GH35 |
| TC | HRGMv2_0996_11 | HRGMv2_0996_11_49 | 55262 | 55726 | + | 4.A.6.1.18 |
| TC | HRGMv2_0996_11 | HRGMv2_0996_11_50 | 55820 | 56707 | + | 4.A.6.1.18 |
| TC | HRGMv2_0996_11 | HRGMv2_0996_11_51 | 56697 | 57536 | + | 4.A.6.1.18 |
| NULL(UNKNOWN) | HRGMv2_0996_11 | HRGMv2_0996_11_52 | 57725 | 58348 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0996_11 | HRGMv2_0996_11_53 | 58430 | 58858 | + | 4.A.6.1.8 |
| TF | HRGMv2_0996_11 | HRGMv2_0996_11_54 | 58946 | 59680 | + | GntR |
| STP | HRGMv2_0996_11 | HRGMv2_0996_11_55 | 59792 | 60958 | + | SIS | SIS |
| CAZyme | HRGMv2_0996_11 | HRGMv2_0996_11_56 | 61074 | 62243 | + | CE9 |
Gene ID: HRGMv2_0996_11_44
Type: TC
Location: 48707 - 50194 (+)
Type: TC
Location: 48707 - 50194 (+)
Gene ID: HRGMv2_0996_11_45
Type: TF
Location: 50427 - 51158 (+)
Type: TF
Location: 50427 - 51158 (+)
Gene ID: HRGMv2_0996_11_46
Type: CAZyme
Location: 51302 - 52471 (+)
Type: CAZyme
Location: 51302 - 52471 (+)
Gene ID: HRGMv2_0996_11_47
Type: pfam
Location: 52504 - 52977 (+)
Type: pfam
Location: 52504 - 52977 (+)
Gene ID: HRGMv2_0996_11_48
Type: CAZyme
Location: 53463 - 55259 (+)
Type: CAZyme
Location: 53463 - 55259 (+)
Gene ID: HRGMv2_0996_11_49
Type: TC
Location: 55262 - 55726 (+)
Type: TC
Location: 55262 - 55726 (+)
Gene ID: HRGMv2_0996_11_50
Type: TC
Location: 55820 - 56707 (+)
Type: TC
Location: 55820 - 56707 (+)
Gene ID: HRGMv2_0996_11_51
Type: TC
Location: 56697 - 57536 (+)
Type: TC
Location: 56697 - 57536 (+)
Gene ID: HRGMv2_0996_11_52
Type:
Location: 57725 - 58348 (+)
Type:
Location: 57725 - 58348 (+)
Gene ID: HRGMv2_0996_11_53
Type: TC
Location: 58430 - 58858 (+)
Type: TC
Location: 58430 - 58858 (+)
Gene ID: HRGMv2_0996_11_54
Type: TF
Location: 58946 - 59680 (+)
Type: TF
Location: 58946 - 59680 (+)
Gene ID: HRGMv2_0996_11_55
Type: STP
Location: 59792 - 60958 (+)
Type: STP
Location: 59792 - 60958 (+)
Gene ID: HRGMv2_0996_11_56
Type: CAZyme
Location: 61074 - 62243 (+)
Type: CAZyme
Location: 61074 - 62243 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0996_11_45 | vegetarian > vegan | 3.12118 | 0.01882 |
| HRGMv2_0996_11_48 | vegetarian > vegan | 2.64214 | 0.01882 |
| HRGMv2_0996_11_49 | vegetarian > vegan | 3.24252 | 0.01882 |
| HRGMv2_0996_11_51 | vegetarian > vegan | 2.16154 | 0.01882 |