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Cluster: HRGMv2_0996_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0996_11 HRGMv2_0996_11_14 15905 17305 + GH1
TC HRGMv2_0996_11 HRGMv2_0996_11_15 17426 18769 + 4.A.3.2.2
TC HRGMv2_0996_11 HRGMv2_0996_11_16 18930 19232 + 4.A.3.2.9
pfam HRGMv2_0996_11 HRGMv2_0996_11_17 19242 19574 + PTS_IIA
STP HRGMv2_0996_11 HRGMv2_0996_11_18 19816 20769 + Glucokinase
TC HRGMv2_0996_11 HRGMv2_0996_11_19 21013 22872 + 9.B.34.1.2
pfam HRGMv2_0996_11 HRGMv2_0996_11_20 22947 23870 + DHH | DHHA2
TC HRGMv2_0996_11 HRGMv2_0996_11_21 24138 25496 + 2.A.33.1.1
Gene ID: HRGMv2_0996_11_14
Type: CAZyme
Location: 15905 - 17305 (+)
Gene ID: HRGMv2_0996_11_15
Type: TC
Location: 17426 - 18769 (+)
Gene ID: HRGMv2_0996_11_16
Type: TC
Location: 18930 - 19232 (+)
Gene ID: HRGMv2_0996_11_17
Type: pfam
Location: 19242 - 19574 (+)
Gene ID: HRGMv2_0996_11_18
Type: STP
Location: 19816 - 20769 (+)
Gene ID: HRGMv2_0996_11_19
Type: TC
Location: 21013 - 22872 (+)
Gene ID: HRGMv2_0996_11_20
Type: pfam
Location: 22947 - 23870 (+)
Gene ID: HRGMv2_0996_11_21
Type: TC
Location: 24138 - 25496 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0996_11_16 vegan > omnivore 1.02824 0.01479

🧭 Explore Read Mapping of CGC

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